U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    VWC2L-IT1 VWC2L intronic transcript 1 [ Homo sapiens (human) ]

    Gene ID: 100885780, updated on 17-Sep-2024

    Summary

    Official Symbol
    VWC2L-IT1provided by HGNC
    Official Full Name
    VWC2L intronic transcript 1provided by HGNC
    Primary source
    HGNC:HGNC:41508
    See related
    Ensembl:ENSG00000224257 AllianceGenome:HGNC:41508
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See VWC2L-IT1 in Genome Data Viewer
    Location:
    2q35
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (214510182..214536890)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (214994699..215021427)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (215374906..215401614)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene sperm associated antigen 16 Neighboring gene uncharacterized LOC124907973 Neighboring gene ribosomal protein L5 pseudogene 8 Neighboring gene von Willebrand factor C domain containing 2 like Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:215458325-215458965 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17070 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17071 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:215667579-215668122 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17072 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17073 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12296 Neighboring gene endosulfine alpha pseudogene 3 Neighboring gene BRCA1 associated RING domain 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Other Names

    • VWC2L intronic transcript 1 (non-protein coding)

    Clone Names

    • AC107218.2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_047698.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC107218
      Related
      ENST00000416430.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      214510182..214536890
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      214994699..215021427
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)