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    LINC00588 long intergenic non-protein coding RNA 588 [ Homo sapiens (human) ]

    Gene ID: 26138, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00588provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 588provided by HGNC
    Primary source
    HGNC:HGNC:24494
    See related
    AllianceGenome:HGNC:24494
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C8orf71
    Expression
    Restricted expression toward testis (RPKM 1.2) See more
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    Genomic context

    See LINC00588 in Genome Data Viewer
    Location:
    8q12.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (57279543..57284731)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (57701083..57706270)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (58192102..58197290)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1606 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:58172381-58172962 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:58173547-58174128 Neighboring gene uncharacterized LOC286177 Neighboring gene MPRA-validated peak7033 silencer Neighboring gene RNA, U6 small nuclear 596, pseudogene Neighboring gene Sharpr-MPRA regulatory region 3559 Neighboring gene uncharacterized LOC101929488

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_026772.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AL080200

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      57279543..57284731
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187566.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      117957..123145
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      57701083..57706270
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_015643.1: Suppressed sequence

      Description
      NM_015643.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.