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    LOC100127955 uncharacterized LOC100127955 [ Homo sapiens (human) ]

    Gene ID: 100127955, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC100127955
    Gene description
    uncharacterized LOC100127955
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC100127955 in Genome Data Viewer
    Location:
    7p22.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (1838667..1847782)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (1951745..1960705)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375124 Neighboring gene extracellular leucine rich repeat and fibronectin type III domain containing 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1764307-1764893 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1772549-1773050 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25499 Neighboring gene ELFN1 antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 13438 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1847611-1848112 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1848113-1848612 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1852667-1853242 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1878277-1879182 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1887449-1888158 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1897151-1897958 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:1896343-1897150 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1897959-1898765 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:1900385-1901202 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:1901203-1902019 Neighboring gene mitotic arrest deficient 1 like 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:1902954-1903628 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_98143 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:1913269-1914241 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1923010-1923799 Neighboring gene microRNA 4655 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:1930010-1930510 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:1930511-1931011 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:1940274-1941134 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1951273-1951773 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1951951-1952584 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1952585-1953218 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1970348-1971296 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_98173 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1979601-1980186 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25500 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25502 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25503 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1985471-1986286 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1986287-1987101 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:1994453-1995177 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:1997460-1998140 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:2000936-2002135 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr7:2019399-2020598 Neighboring gene uncharacterized LOC124901573 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:2037703-2038424 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:2041223-2042211 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:2054673-2054929 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17862 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25504 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:2059628-2060447 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:2071047-2071728 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:2072411-2073090 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:2089101-2089704 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:2094763-2095278 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:2095767-2096320 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:2096321-2096873 Neighboring gene Sharpr-MPRA regulatory region 15277 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:2109248-2109803 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:2109804-2110358 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25505 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:2112531-2113084 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:2113104-2113604 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:2117862-2118431 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:2118432-2119000 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:2119001-2119570 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:2119571-2120138 Neighboring gene small nucleolar RNA, H/ACA box 114

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    General gene information

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    Markers

    Clone Names

    • AC110781.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      1838667..1847782
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_108730.5 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      1951745..1960705
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007078220.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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