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    RBM26-AS1 RBM26 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100505538, updated on 10-Oct-2023

    Summary

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    Official Symbol
    RBM26-AS1provided by HGNC
    Official Full Name
    RBM26 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:39805
    See related
    Ensembl:ENSG00000227354 AllianceGenome:HGNC:39805
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in testis (RPKM 1.9), ovary (RPKM 1.3) and 24 other tissues See more
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    Genomic context

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    See RBM26-AS1 in Genome Data Viewer
    Location:
    13q31.1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (79406309..79424336)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (78634378..78652330)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (79980444..79998471)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5425 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7850 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7851 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7852 Neighboring gene BCAS2 pseudogene 3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:79772046-79772677 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7853 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7854 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7855 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:79853422-79854140 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:79857373-79858352 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr13:79862351-79862939 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:79881601-79882102 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:79904806-79905306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:79905307-79905807 Neighboring gene RNA binding motif protein 26 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7856 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7857 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:79980055-79981046 Neighboring gene RNA, 5S ribosomal pseudogene 33 Neighboring gene uncharacterized LOC105370274 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5427 Neighboring gene NDFIP2 antisense RNA 1 Neighboring gene Nedd4 family interacting protein 2 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr13:80134686-80135885 Neighboring gene long intergenic non-protein coding RNA 1068

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • RBM26 antisense RNA 1 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038991.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK002196, AL139006, BC034812
      Related
      ENST00000606049.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      79406309..79424336
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      78634378..78652330
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials