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    LOC102723722 uncharacterized LOC102723722 [ Homo sapiens (human) ]

    Gene ID: 102723722, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC102723722
    Gene description
    uncharacterized LOC102723722
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Annotation information
    Annotation category: only annotated on alternate loci and patches unit in reference assembly
    Expression
    Ubiquitous expression in liver (RPKM 6.3), testis (RPKM 5.1) and 25 other tissues See more
    Orthologs
    all
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    Genomic context

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    See LOC102723722 in Genome Data Viewer
    Location:
    22q13.2
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 (ALT_REF_LOCI_3) NT_187682.1 (58185..59530)
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 (ALT_REF_LOCI_2) NW_004504305.1 (62824..72503)
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 (PATCHES) NW_015148968.1 (7630..29429)

    NW_004504305.1Genomic Context describing neighboring genes Neighboring gene NDUFA6 divergent transcript Neighboring gene OLA1 pseudogene 1 Neighboring gene CYP2D6 promoter Neighboring gene cytochrome P450 family 2 subfamily D member 6 (gene/pseudogene) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42532244-42532832 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42532833-42533420 Neighboring gene cytochrome P450 family 2 subfamily D member 6 pseudogene

    NT_187682.1Genomic Context describing neighboring genes Neighboring gene NDUFA6 divergent transcript Neighboring gene OLA1 pseudogene 1 Neighboring gene CYP2D6 promoter Neighboring gene cytochrome P450 family 2 subfamily D member 6 (gene/pseudogene) Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42532244-42532832 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42532833-42533420 Neighboring gene cytochrome P450 family 2 subfamily D member 7 (gene/pseudogene) Neighboring gene uncharacterized LOC105377203

    NW_015148968.1Genomic Context describing neighboring genes Neighboring gene NDUFA6 divergent transcript Neighboring gene cytochrome P450 family 2 subfamily D member 6 (gene/pseudogene) Neighboring gene CYP2D6 promoter Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42532244-42532832 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:42532833-42533420 Neighboring gene cytochrome P450, subfamily IID (debrisoquine, sparteine, etc., -metabolising), polypeptide 7b (pseudogene) Neighboring gene cytochrome P450 family 2 subfamily D member 7 (gene/pseudogene) Neighboring gene ccytochrome P450 family 2 subfamily D member 8, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Citalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations. Ji Y, et al. Br J Clin Pharmacol, 2014 Aug. PMID 24528284, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    EBI GWAS Catalog

    Description
    Citalopram and escitalopram plasma drug and metabolite concentrations: genome-wide associations.
    EBI GWAS Catalog

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Homology

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_015148968.1 Reference GRCh38.p14 PATCHES

      Range
      7630..29429
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007069004.1 RNA Sequence

    2. XR_007068998.1 RNA Sequence

    3. XR_007068997.1 RNA Sequence

    4. XR_007068999.1 RNA Sequence

    5. XR_007069001.1 RNA Sequence

    6. XR_007069000.1 RNA Sequence

    7. XR_007069009.1 RNA Sequence

    8. XR_007069010.1 RNA Sequence

    9. XR_007069003.1 RNA Sequence

    10. XR_007069012.1 RNA Sequence

    11. XR_007069011.1 RNA Sequence

    12. XR_007069005.1 RNA Sequence

    13. XR_007069006.1 RNA Sequence

    14. XR_007069007.1 RNA Sequence

    15. XR_007069016.1 RNA Sequence

    16. XR_007069002.1 RNA Sequence

    17. XR_007069013.1 RNA Sequence

    18. XR_007069008.1 RNA Sequence

    19. XR_007069014.1 RNA Sequence

    20. XR_007069015.1 RNA Sequence

    21. XR_007068996.1 RNA Sequence

    Reference GRCh38.p14 ALT_REF_LOCI_2

    Genomic

    1. NW_004504305.1 Reference GRCh38.p14 ALT_REF_LOCI_2

      Range
      62824..72503
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007068809.1 RNA Sequence

    2. XR_001756663.2 RNA Sequence

    3. XR_952545.3 RNA Sequence

    4. XR_952546.3 RNA Sequence

    5. XR_007068810.1 RNA Sequence

    6. XR_952542.3 RNA Sequence

    7. XR_952544.3 RNA Sequence

    8. XR_007068808.1 RNA Sequence

    Reference GRCh38.p14 ALT_REF_LOCI_3

    Genomic

    1. NT_187682.1 Reference GRCh38.p14 ALT_REF_LOCI_3

      Range
      58185..59530
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007068828.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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