U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    MAPRE3 microtubule associated protein RP/EB family member 3 [ Homo sapiens (human) ]

    Gene ID: 22924, updated on 28-Oct-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    MAPRE3provided by HGNC
    Official Full Name
    microtubule associated protein RP/EB family member 3provided by HGNC
    Primary source
    HGNC:HGNC:6892
    See related
    Ensembl:ENSG00000084764 MIM:605788; AllianceGenome:HGNC:6892
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    EB3; RP3; EBF3; EBF3-S
    Summary
    The protein encoded by this gene is a member of the RP/EB family of genes. The protein localizes to the cytoplasmic microtubule network and binds APCL, a homolog of the adenomatous polyposis coli tumor suppressor gene. [provided by RefSeq, Jul 2008]
    Expression
    Broad expression in brain (RPKM 45.3), testis (RPKM 13.7) and 20 other tissues See more
    Orthologs
    mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See MAPRE3 in Genome Data Viewer
    Location:
    2p23.3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (26970637..27027219)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (27012305..27068902)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (27193505..27250087)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene dihydropyrimidinase like 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15480 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:27135238-27135875 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:27136064-27137020 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:27157221-27157720 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:27172437-27172937 Neighboring gene uncharacterized LOC124905979 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11278 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15481 Neighboring gene MAPRE3 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:27247061-27247851 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15482 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:27261678-27262877 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15483 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11279 Neighboring gene transmembrane protein 214 Neighboring gene AGBL5 antisense RNA 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Frameshift mutation of MAPRE3, a microtubule-related gene, in gastric and colorectal cancers with microsatellite instability. Kim YR, et al. Pathology, 2010. PMID 20632835
    2. NMR resonance assignment and structure prediction of the C-terminal domain of the microtubule end-binding protein 3. Abdelkarim H, et al. PLoS One, 2020. PMID 32421702, Free PMC Article
    3. The drebrin/EB3 pathway drives invasive activity in prostate cancer. Dart AE, et al. Oncogene, 2017 Jul 20. PMID 28319065, Free PMC Article
    4. RP1, a new member of the adenomatous polyposis coli-binding EB1-like gene family, is differentially expressed in activated T cells. Renner C, et al. J Immunol, 1997 Aug 1. PMID 9233623
    5. Dynein light chain rp3 acts as a nuclear matrix-associated transcriptional modulator in a dynein-independent pathway. Yeh TY, et al. J Cell Sci, 2005 Aug 1. PMID 16079286

    See all (66) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. MAPRE3 as an epigenetic target of EZH2 restricts ovarian cancer proliferation in vitro and in vivo.
      Title: MAPRE3 as an epigenetic target of EZH2 restricts ovarian cancer proliferation in vitro and in vivo.
    2. structure prediction of the C-terminal domain of the microtubule end-binding protein 3
      Title: NMR resonance assignment and structure prediction of the C-terminal domain of the microtubule end-binding protein 3.
    3. Extracellular recordings revealed that the V337M tau mutation leads to an abnormal increase in neuronal activity in response to chronic depolarization. In neurons with this mutation, axon initial segment (AIS) plasticity is impaired by the abnormal accumulation of end-binding protein 3 (EB3) in the AIS submembrane region.
      Title: Pathogenic Tau Impairs Axon Initial Segment Plasticity and Excitability Homeostasis.
    4. IP3K-A binds to EB3 and their binding affinity is precisely regulated by protein kinase A (PKA)-dependent phosphorylation of IP3K-A at Ser119 (pSer119). The complex of IP3K-A and EB3 dissociates and reassociates rapidly during chemically induced LTP.
      Title: PKA-dependent phosphorylation of IP3K-A at Ser119 regulates a binding affinity with EB3.
    5. One candidate pathway coupling actin filaments to microtubules consists of the actin filament-binding protein drebrin and the microtubule-binding +TIP protein EB3. This pathway is regulated proximally by cyclin-dependent kinase 5 phosphorylation of drebrin but the upstream elements in the pathway have yet to be identified.
      Title: Phosphorylation of Drebrin and Its Role in Neuritogenesis.
    6. EB1 and EB3 thus affect multiple interphase processes and have a major impact on microtubule minus end organization.
      Title: EB1 and EB3 regulate microtubule minus end organization and Golgi morphology.
    7. Findings show that co-ordination of dynamic microtubules and actin filaments by the drebrin/EB3 pathway drives prostate cancer cell invasion and is therefore implicated in disease progression.
      Title: The drebrin/EB3 pathway drives invasive activity in prostate cancer.
    8. Aptamers binding to human EB1 and EB3, which have sequence requirements similar to but distinct from each other and from Drosophila EB1, were identified.
      Title: Peptide aptamers define distinct EB1- and EB3-binding motifs and interfere with microtubule dynamics.
    9. EB1 and EB3 proteins are obligatory dimers.
      Title: End binding proteins are obligatory dimers.
    10. Findings suggest that methylation-associated down-regulation of EBF3 and IRX1 genes may play an important role in a pathogenic effect of TGF-beta on RASFs.
      Title: Hypermethylation of EBF3 and IRX1 genes in synovial fibroblasts of patients with rheumatoid arthritis.
    Submit: New GeneRIF Correction See all GeneRIFs (20)

    Phenotypes

    Go to the top of the page Help

    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables microtubule binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables microtubule plus-end binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein kinase binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell division IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in positive regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    involved_in positive regulation of cyclin-dependent protein serine/threonine kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    involved_in positive regulation of protein kinase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in protein localization TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in protein localization to microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of microtubule polymerization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of microtubule polymerization or depolymerization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in spindle assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    is_active_in cytoplasmic microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    colocalizes_with cytoplasmic microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in microtubule cytoskeleton IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in microtubule organizing center IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in microtubule plus-end IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in midbody ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in mitotic spindle astral microtubule end IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in perinuclear region of cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in spindle midzone IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    microtubule-associated protein RP/EB family member 3
    Names
    APC binding protein
    EB1 protein family member 3
    end-binding protein 3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001303050.2 → NP_001289979.1  microtubule-associated protein RP/EB family member 3 isoform 1

      See identical proteins and their annotated locations for NP_001289979.1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants encode the same protein.
      Source sequence(s)
      AB025186, AC013472, BC011557, BM560331, HY011071
      Consensus CDS
      CCDS1731.1
      UniProtKB/Swiss-Prot
      B7WPK5, O00265, Q6FHB0, Q6FI15, Q9BZP7, Q9BZP8, Q9UPY8
      UniProtKB/TrEMBL
      B2R5W6
      Conserved Domains (1) summary
      COG5217
      Location:16 → 279
      BIM1; Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]

    2. NM_001410716.1 → NP_001397645.1  microtubule-associated protein RP/EB family member 3 isoform 2

      Status: REVIEWED

      Source sequence(s)
      AC013472
      Consensus CDS
      CCDS92722.1
      Related
      ENSP00000383915.3, ENST00000405074.7

    3. NM_012326.4 → NP_036458.2  microtubule-associated protein RP/EB family member 3 isoform 1

      See identical proteins and their annotated locations for NP_036458.2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants encode the same protein.
      Source sequence(s)
      AB025186, AC013472, BC011557, DC417465
      Consensus CDS
      CCDS1731.1
      UniProtKB/Swiss-Prot
      B7WPK5, O00265, Q6FHB0, Q6FI15, Q9BZP7, Q9BZP8, Q9UPY8
      UniProtKB/TrEMBL
      B2R5W6
      Related
      ENSP00000233121.2, ENST00000233121.7
      Conserved Domains (1) summary
      COG5217
      Location:16 → 279
      BIM1; Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      26970637..27027219
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047443728.1 → XP_047299684.1  microtubule-associated protein RP/EB family member 3 isoform X1

      UniProtKB/Swiss-Prot
      B7WPK5, O00265, Q6FHB0, Q6FI15, Q9BZP7, Q9BZP8, Q9UPY8

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      27012305..27068902
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054341040.1 → XP_054197015.1  microtubule-associated protein RP/EB family member 3 isoform X1

      UniProtKB/Swiss-Prot
      B7WPK5, O00265, Q6FHB0, Q6FI15, Q9BZP7, Q9BZP8, Q9UPY8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9UPY8.1 GenPept UniProtKB/Swiss-Prot:Q9UPY8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools