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    MIR9-3HG MIR9-3 host gene [ Homo sapiens (human) ]

    Gene ID: 254559, updated on 22-Oct-2024

    Summary

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    Official Symbol
    MIR9-3HGprovided by HGNC
    Official Full Name
    MIR9-3 host geneprovided by HGNC
    Primary source
    HGNC:HGNC:27388
    See related
    Ensembl:ENSG00000255571 AllianceGenome:HGNC:27388
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    BS-DRL1; LINC00925; lnc-FANCI-2
    Expression
    Biased expression in brain (RPKM 10.1), testis (RPKM 6.8) and 2 other tissues See more
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    Genomic context

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    See MIR9-3HG in Genome Data Viewer
    Location:
    15q26.1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (89361579..89398488)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (87117636..87154521)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (89904810..89941719)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10047 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10048 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10049 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:89880071-89880240 Neighboring gene tRNA-Arg (anticodon TCG) 1-1 Neighboring gene POLG divergent transcript Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr15:89891730-89892929 Neighboring gene uncharacterized LOC124903549 Neighboring gene Sharpr-MPRA regulatory region 10069 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6794 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6795 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89910855-89911468 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:89913278-89914160 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:89914161-89915042 Neighboring gene uncharacterized LOC107984777 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10051 Neighboring gene microRNA 9-3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89943355-89943880 Neighboring gene uncharacterized LOC105371031 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89943881-89944405 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10052 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr15:89950909-89951506 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89959457-89959966 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89959967-89960475 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6797 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:89977117-89977646 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:89984167-89984846 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:89984847-89985526 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:89988016-89988870 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:89991872-89992466 Neighboring gene uncharacterized LOC105370964 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6798 Neighboring gene uncharacterized LOC112268153

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Development and validation of an autophagy-related long non-coding RNA prognostic signature for cervical squamous cell carcinoma and endocervical adenocarcinoma. Zhou S, et al. Front Oncol, 2022. PMID 36408157, Free PMC Article
    2. LncRNA MIR9-3HG enhances LIMK1 mRNA and protein levels to contribute to the carcinogenesis of lung squamous cell carcinoma via sponging miR-138-5p and recruiting TAF15. Xiong Y, et al. Pathol Res Pract, 2022 Sep. PMID 35933883
    3. Dysregulated LncRNAs Act as Competitive Endogenous RNAs and Are Associated With Cervical Cancer Development in UYGHUR Women. Chen Y, et al. Technol Cancer Res Treat, 2021 Jan-Dec. PMID 33596784, Free PMC Article
    4. Identification of N(6)-methyladenosine-related lncRNAs for patients with primary glioblastoma. Wang W, et al. Neurosurg Rev, 2021 Feb. PMID 31938968
    5. Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes. Baskerville S, et al. RNA, 2005 Mar. PMID 15701730, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Our study provides evidence that miR-9 can promote the proliferation, migration, and invasion of breast cancer cells via down-regulating FOXO1.
      Title: MicroRNA-9 promotes the proliferation, migration, and invasion of breast cancer cells via down-regulating FOXO1.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • Brain specific DNA-damage related lncRNA 1
    • CTD-2335A18.1
    • long intergenic non-protein coding RNA 925

    Clone Names

    • FLJ30148, FLJ39040

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015411.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637
      Related
      ENST00000658764.1

    2. NR_133001.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637
      Related
      ENST00000536780.6

    3. NR_133002.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    4. NR_133003.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    5. NR_190290.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    6. NR_190291.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637
      Related
      ENST00000658770.1

    7. NR_190292.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637
      Related
      ENST00000666816.1

    8. NR_190293.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    9. NR_190294.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    10. NR_190295.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    11. NR_190296.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    12. NR_190297.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637
      Related
      ENST00000670779.1

    13. NR_190298.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    14. NR_190299.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    15. NR_190300.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    16. NR_190301.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    17. NR_190302.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    18. NR_190303.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    19. NR_190304.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    20. NR_190305.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    21. NR_190306.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    22. NR_190307.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    23. NR_190308.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    24. NR_190309.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    25. NR_190310.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    26. NR_190311.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    27. NR_190312.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637
      Related
      ENST00000654171.1

    28. NR_190313.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    29. NR_190314.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637
      Related
      ENST00000654184.1

    30. NR_190315.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637
      Related
      ENST00000659235.1

    31. NR_190316.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637
      Related
      ENST00000661040.1

    32. NR_190317.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637
      Related
      ENST00000669499.1

    33. NR_190318.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637
      Related
      ENST00000657897.1

    34. NR_190319.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637
      Related
      ENST00000661036.1

    35. NR_190320.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    36. NR_190321.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    37. NR_190322.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637
      Related
      ENST00000654079.1

    38. NR_190323.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    39. NR_190324.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    40. NR_190325.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    41. NR_190326.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC013391, AC133637

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      89361579..89398488
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      87117636..87154521
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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