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    LINC01122 long intergenic non-protein coding RNA 1122 [ Homo sapiens (human) ]

    Gene ID: 400955, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC01122provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1122provided by HGNC
    Primary source
    HGNC:HGNC:49267
    See related
    Ensembl:ENSG00000233723 AllianceGenome:HGNC:49267
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01122 in Genome Data Viewer
    Location:
    2p16.1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (58520753..59063766)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (58525587..59068770)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (58747888..59290901)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1795 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:58724227-58724831 Neighboring gene IK cytokine, down-regulator of HLA II pseudogene Neighboring gene VISTA enhancer hs1174 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr2:58762333-58763089 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:58766943-58767526 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:58767527-58768108 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:58781578-58782078 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:58782079-58782579 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:58785797-58786470 Neighboring gene VISTA enhancer hs1071 Neighboring gene VISTA enhancer hs1152 Neighboring gene VISTA enhancer hs1067 Neighboring gene VISTA enhancer hs1199 Neighboring gene uncharacterized LOC124907771 Neighboring gene VISTA enhancer hs1181 Neighboring gene NANOG hESC enhancer GRCh37_chr2:59181909-59182410 Neighboring gene VISTA enhancer hs393 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:59269296-59269445 Neighboring gene VISTA enhancer hs975 Neighboring gene uncharacterized LOC105374754 Neighboring gene VISTA enhancer hs1119 Neighboring gene long intergenic non-protein coding RNA 1793 Neighboring gene VISTA enhancer hs836 Neighboring gene VISTA enhancer hs394 Neighboring gene RNA, U6 small nuclear 508, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Risk for myasthenia gravis maps to a (151) Pro→Ala change in TNIP1 and to human leukocyte antigen-B*08. Gregersen PK, et al. Ann Neurol, 2012 Dec. PMID 23055271, Free PMC Article
    2. A genome-wide association study of DSM-IV cannabis dependence. Agrawal A, et al. Addict Biol, 2011 Jul. PMID 21668797, Free PMC Article
    3. Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species. Hezroni H, et al. Cell Rep, 2015 May 19. PMID 25959816, Free PMC Article
    4. A genome-wide association study identifies three loci associated with susceptibility to uterine fibroids. Cha PC, et al. Nat Genet, 2011 May. PMID 21460842
    5. Cross-disorder genome-wide analyses suggest a complex genetic relationship between Tourette's syndrome and OCD. Yu D, et al. Am J Psychiatry, 2015 Jan. PMID 25158072, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    A genome-wide association study identifies three loci associated with susceptibility to uterine fibroids.
    EBI GWAS Catalog
    A genome-wide association study of DSM-IV cannabis dependence.
    EBI GWAS Catalog
    Cross-Disorder Genome-Wide Analyses Suggest a Complex Genetic Relationship Between Tourette's Syndrome and OCD.
    EBI GWAS Catalog
    Genome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.
    EBI GWAS Catalog
    Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.
    EBI GWAS Catalog
    Risk for myasthenia gravis maps to a (151) Pro→Ala change in TNIP1 and to human leukocyte antigen-B*08.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Clone Names

    • FLJ30838, AC007092.1, DKFZp547K0718

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033873.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007077, AC007092, AK055400, AL534733, AL832565
      Related
      ENST00000452840.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      58520753..59063766
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      58525587..59068770
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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