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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029704.1 RefSeqGene
- Range
-
5001..225847
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_006264.3 → NP_006255.1 tyrosine-protein phosphatase non-receptor type 13 isoform 2
See identical proteins and their annotated locations for NP_006255.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks multiple in-frame segments of the coding region, compared to variant 4. The encoded protein (isoform 2) lacks 19 internal amino acids, compared to isoform 4.
- Source sequence(s)
-
BG202767, D21210, DA625835
- Consensus CDS
-
CCDS47095.1
- UniProtKB/TrEMBL
-
Q59H55
- Related
- ENSP00000408368.2, ENST00000427191.6
- Conserved Domains (10) summary
-
- smart00194
Location:2195 → 2447
- PTPc; Protein tyrosine phosphatase, catalytic domain
- smart00228
Location:1479 → 1570
- PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
- smart00295
Location:573 → 781
- B41; Band 4.1 homologues
- smart00750
Location:3 → 190
- KIND; kinase non-catalytic C-lobe domain
- cd00047
Location:2221 → 2447
- PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
- cd00992
Location:1072 → 1156
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam00373
Location:668 → 781
- FERM_M; FERM central domain
- pfam09379
Location:576 → 638
- FERM_N; FERM N-terminal domain
- pfam16599
Location:1158 → 1348
- PTN13_u3; Unstructured linker region on PTN13 protein between PDZ
- cl17171
Location:777 → 877
- PH-like; Pleckstrin homology-like domain
-
NM_080683.3 → NP_542414.1 tyrosine-protein phosphatase non-receptor type 13 isoform 1
See identical proteins and their annotated locations for NP_542414.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) lacks an in-frame segment of a coding exon, compared to variant 4. The encoded protein (isoform 1) lacks 5 internal amino acids, compared to isoform 4.
- Source sequence(s)
-
BG202767, D21209, DA625835
- Consensus CDS
-
CCDS47094.1
- UniProtKB/Swiss-Prot
- B2RTR0, Q12923, Q15159, Q15263, Q15264, Q15265, Q15674, Q16826, Q8IWH7, Q9NYN9, Q9UDA8
- UniProtKB/TrEMBL
-
Q59H55
- Related
- ENSP00000407249.2, ENST00000411767.7
- Conserved Domains (10) summary
-
- smart00194
Location:2214 → 2466
- PTPc; Protein tyrosine phosphatase, catalytic domain
- smart00228
Location:1498 → 1589
- PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
- smart00295
Location:573 → 781
- B41; Band 4.1 homologues
- smart00750
Location:3 → 190
- KIND; kinase non-catalytic C-lobe domain
- cd00047
Location:2240 → 2466
- PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
- cd00992
Location:1091 → 1175
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam00373
Location:668 → 781
- FERM_M; FERM central domain
- pfam09379
Location:576 → 638
- FERM_N; FERM N-terminal domain
- pfam16599
Location:1177 → 1367
- PTN13_u3; Unstructured linker region on PTN13 protein between PDZ
- cl17171
Location:777 → 877
- PH-like; Pleckstrin homology-like domain
-
NM_080684.3 → NP_542415.1 tyrosine-protein phosphatase non-receptor type 13 isoform 3
See identical proteins and their annotated locations for NP_542415.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) lacks multiple in-frame segments of the coding region, compared to variant 4. The encoded protein (isoform 3) lacks 191 internal amino acids, compared to isoform 4.
- Source sequence(s)
-
BG202767, D21211, DA625835
- Consensus CDS
-
CCDS47096.1
- UniProtKB/TrEMBL
-
Q59H55
- Related
- ENSP00000322675.6, ENST00000316707.10
- Conserved Domains (10) summary
-
- smart00194
Location:2023 → 2275
- PTPc; Protein tyrosine phosphatase, catalytic domain
- smart00228
Location:1307 → 1398
- PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
- smart00295
Location:573 → 781
- B41; Band 4.1 homologues
- smart00750
Location:3 → 190
- KIND; kinase non-catalytic C-lobe domain
- cd00047
Location:2049 → 2275
- PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
- cd00992
Location:900 → 984
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam00373
Location:668 → 781
- FERM_M; FERM central domain
- pfam09379
Location:576 → 638
- FERM_N; FERM N-terminal domain
- pfam16599
Location:986 → 1176
- PTN13_u3; Unstructured linker region on PTN13 protein between PDZ
- cl17171
Location:777 → 877
- PH-like; Pleckstrin homology-like domain
-
NM_080685.3 → NP_542416.1 tyrosine-protein phosphatase non-receptor type 13 isoform 4
See identical proteins and their annotated locations for NP_542416.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) encodes the longest isoform (4).
- Source sequence(s)
-
BG202767, D21209, DA625835, L34583
- Consensus CDS
-
CCDS47093.1
- UniProtKB/TrEMBL
-
Q59H55
- Related
- ENSP00000394794.1, ENST00000436978.5
- Conserved Domains (10) summary
-
- smart00194
Location:2219 → 2471
- PTPc; Protein tyrosine phosphatase, catalytic domain
- smart00228
Location:1503 → 1594
- PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
- smart00295
Location:573 → 781
- B41; Band 4.1 homologues
- smart00750
Location:3 → 190
- KIND; kinase non-catalytic C-lobe domain
- cd00047
Location:2245 → 2471
- PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
- cd00992
Location:1091 → 1175
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam00373
Location:668 → 781
- FERM_M; FERM central domain
- pfam09379
Location:576 → 638
- FERM_N; FERM N-terminal domain
- pfam16599
Location:1177 → 1367
- PTN13_u3; Unstructured linker region on PTN13 protein between PDZ
- cl17171
Location:777 → 877
- PH-like; Pleckstrin homology-like domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000004.12 Reference GRCh38.p14 Primary Assembly
- Range
-
86594315..86815161
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011532165.3 → XP_011530467.1 tyrosine-protein phosphatase non-receptor type 13 isoform X1
- UniProtKB/TrEMBL
-
Q59H55
- Conserved Domains (10) summary
-
- smart00194
Location:2236 → 2488
- PTPc; Protein tyrosine phosphatase, catalytic domain
- smart00228
Location:1503 → 1594
- PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
- smart00295
Location:573 → 781
- B41; Band 4.1 homologues
- smart00750
Location:3 → 190
- KIND; kinase non-catalytic C-lobe domain
- cd00047
Location:2262 → 2488
- PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
- cd00992
Location:1091 → 1175
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam00373
Location:668 → 781
- FERM_M; FERM central domain
- pfam09379
Location:576 → 638
- FERM_N; FERM N-terminal domain
- pfam16599
Location:1177 → 1367
- PTN13_u3; Unstructured linker region on PTN13 protein between PDZ
- cl17171
Location:777 → 877
- PH-like; Pleckstrin homology-like domain
-
XM_017008511.3 → XP_016864000.1 tyrosine-protein phosphatase non-receptor type 13 isoform X2
- UniProtKB/TrEMBL
-
Q59H55
-
XM_017008512.3 → XP_016864001.1 tyrosine-protein phosphatase non-receptor type 13 isoform X3
- UniProtKB/TrEMBL
-
Q59H55
-
XM_017008514.3 → XP_016864003.1 tyrosine-protein phosphatase non-receptor type 13 isoform X5
- UniProtKB/TrEMBL
-
Q59H55
-
XM_017008513.3 → XP_016864002.1 tyrosine-protein phosphatase non-receptor type 13 isoform X4
- UniProtKB/TrEMBL
-
Q59H55
-
XM_017008516.3 → XP_016864005.1 tyrosine-protein phosphatase non-receptor type 13 isoform X8
- UniProtKB/TrEMBL
-
Q59H55
-
XM_047416041.1 → XP_047271997.1 tyrosine-protein phosphatase non-receptor type 13 isoform X13
-
XM_047416038.1 → XP_047271994.1 tyrosine-protein phosphatase non-receptor type 13 isoform X10
-
XM_017008515.3 → XP_016864004.1 tyrosine-protein phosphatase non-receptor type 13 isoform X7
- UniProtKB/TrEMBL
-
Q59H55
-
XM_047416039.1 → XP_047271995.1 tyrosine-protein phosphatase non-receptor type 13 isoform X11
-
XM_047416037.1 → XP_047271993.1 tyrosine-protein phosphatase non-receptor type 13 isoform X9
-
XM_047416042.1 → XP_047271998.1 tyrosine-protein phosphatase non-receptor type 13 isoform X14
-
XM_047416040.1 → XP_047271996.1 tyrosine-protein phosphatase non-receptor type 13 isoform X12
-
XM_047416044.1 → XP_047272000.1 tyrosine-protein phosphatase non-receptor type 13 isoform X16
-
XM_047416043.1 → XP_047271999.1 tyrosine-protein phosphatase non-receptor type 13 isoform X15
-
XM_047416045.1 → XP_047272001.1 tyrosine-protein phosphatase non-receptor type 13 isoform X17
-
XM_047416047.1 → XP_047272003.1 tyrosine-protein phosphatase non-receptor type 13 isoform X19
-
XM_047416046.1 → XP_047272002.1 tyrosine-protein phosphatase non-receptor type 13 isoform X18
-
XM_047416048.1 → XP_047272004.1 tyrosine-protein phosphatase non-receptor type 13 isoform X20
-
XM_047416036.1 → XP_047271992.1 tyrosine-protein phosphatase non-receptor type 13 isoform X6
Alternate T2T-CHM13v2.0
Genomic
-
NC_060928.1 Alternate T2T-CHM13v2.0
- Range
-
89923800..90144654
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054350640.1 → XP_054206615.1 tyrosine-protein phosphatase non-receptor type 13 isoform X1
-
XM_054350641.1 → XP_054206616.1 tyrosine-protein phosphatase non-receptor type 13 isoform X2
-
XM_054350642.1 → XP_054206617.1 tyrosine-protein phosphatase non-receptor type 13 isoform X3
-
XM_054350644.1 → XP_054206619.1 tyrosine-protein phosphatase non-receptor type 13 isoform X5
-
XM_054350643.1 → XP_054206618.1 tyrosine-protein phosphatase non-receptor type 13 isoform X4
-
XM_054350646.1 → XP_054206621.1 tyrosine-protein phosphatase non-receptor type 13 isoform X8
-
XM_054350651.1 → XP_054206626.1 tyrosine-protein phosphatase non-receptor type 13 isoform X13
-
XM_054350648.1 → XP_054206623.1 tyrosine-protein phosphatase non-receptor type 13 isoform X10
-
XM_054350645.1 → XP_054206620.1 tyrosine-protein phosphatase non-receptor type 13 isoform X7
-
XM_054350649.1 → XP_054206624.1 tyrosine-protein phosphatase non-receptor type 13 isoform X11
-
XM_054350647.1 → XP_054206622.1 tyrosine-protein phosphatase non-receptor type 13 isoform X9
-
XM_054350652.1 → XP_054206627.1 tyrosine-protein phosphatase non-receptor type 13 isoform X14
-
XM_054350650.1 → XP_054206625.1 tyrosine-protein phosphatase non-receptor type 13 isoform X12
-
XM_054350654.1 → XP_054206629.1 tyrosine-protein phosphatase non-receptor type 13 isoform X16
-
XM_054350653.1 → XP_054206628.1 tyrosine-protein phosphatase non-receptor type 13 isoform X15
-
XM_054350655.1 → XP_054206630.1 tyrosine-protein phosphatase non-receptor type 13 isoform X17
-
XM_054350657.1 → XP_054206632.1 tyrosine-protein phosphatase non-receptor type 13 isoform X19
-
XM_054350656.1 → XP_054206631.1 tyrosine-protein phosphatase non-receptor type 13 isoform X18
-
XM_054350658.1 → XP_054206633.1 tyrosine-protein phosphatase non-receptor type 13 isoform X20