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    RFTN2 raftlin family member 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 505671, updated on 4-Oct-2024

    Summary

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    Official Symbol
    RFTN2provided by VGNC
    Official Full Name
    raftlin family member 2provided by VGNC
    Primary source
    VGNC:VGNC:33892
    See related
    BGD:BT20766; Ensembl:ENSBTAG00000007652
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See RFTN2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (86100990..86192695, complement)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene heat shock protein family E (Hsp10) member 1 Neighboring gene MOB family member 4, phocein Neighboring gene methionyl-tRNA synthetase 2, mitochondrial Neighboring gene boule homolog, RNA binding protein Neighboring gene phospholipase C like 1 (inactive) Neighboring gene uncharacterized LOC132343174

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of bovine mammary gland EST and functional annotation of the Bos taurus gene index. Sonstegard TS, et al. Mamm Genome, 2002 Jul. PMID 12140684
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    raftlin-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001097986.2 → NP_001091455.2  raftlin-2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      NKLS02000002
      Related
      ENSBTAP00000010067.6, ENSBTAT00000010067.6

    2. NM_001428698.1 → NP_001415627.1  raftlin-2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      NKLS02000002

    3. NM_001428699.1 → NP_001415628.1  raftlin-2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      NKLS02000002

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      86100990..86192695 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024999758.2 → XP_024855526.1  raftlin-2 isoform X2

      Conserved Domains (1) summary
      pfam15250
      Location:1 → 428
      Raftlin; Raftlin

    2. XM_024999760.2 → XP_024855528.1  raftlin-2 isoform X2

      Conserved Domains (1) summary
      pfam15250
      Location:1 → 428
      Raftlin; Raftlin

    3. XM_005202608.5 → XP_005202665.1  raftlin-2 isoform X1

      Conserved Domains (1) summary
      pfam15250
      Location:14 → 441
      Raftlin; Raftlin

    4. XM_005202611.5 → XP_005202668.1  raftlin-2 isoform X2

      Conserved Domains (1) summary
      pfam15250
      Location:1 → 428
      Raftlin; Raftlin

    5. XM_010802169.4 → XP_010800471.1  raftlin-2 isoform X3

      See identical proteins and their annotated locations for XP_010800471.1

      Conserved Domains (1) summary
      pfam15250
      Location:4 → 384
      Raftlin; Raftlin

    6. XM_059892223.1 → XP_059748206.1  raftlin-2 isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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