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    XP-G family Fen1-like nuclease [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2543216, updated on 18-Sep-2024

    Summary

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    Official Full Name
    XP-G family Fen1-like nuclease
    Primary source
    PomBase:SPAC12G12.16c
    Locus tag
    SPOM_SPAC12G12.16C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (315608..317585)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene N-acetyltransferase Neighboring gene ncRNA Neighboring gene tRNA pseudouridylate synthase Neighboring gene ncRNA Neighboring gene Sad1-interacting factor 3 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    2. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
    3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    4. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article
    5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe. The cytochrome b gene has an intron closely related to the first two introns in the Saccharomyces cerevisiae cox1 gene. Lang BF, et al. J Mol Biol, 1985 Aug 5. PMID 4046021

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables 5'-3' DNA exonuclease activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables 5'-3' exonuclease activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables 5'-flap endonuclease activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in double-strand break repair via homologous recombination ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm HDA PubMed 
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    XP-G family Fen1-like nuclease

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      315608..317585
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001018282.3 → NP_592882.1  XP-G family Fen1-like nuclease [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_592882.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q09708, Q9UTN5
      Conserved Domains (5) summary
      cd09897
      Location:363 → 429
      H3TH_FEN1-XPG-like; H3TH domains of Flap endonuclease-1 (FEN1)-like structure specific 5' nucleases
      COG0258
      Location:18 → 404
      Exo; 5'-3' exonuclease [Replication, recombination and repair]
      cl02628
      Location:2 → 103
      XPG_N; XPG N-terminal domain
      pfam00867
      Location:286 → 375
      XPG_I; XPG I-region
      cl14812
      Location:202 → 335
      PIN_SF; PIN (PilT N terminus) domain: Superfamily
    Nucleotide Protein
    Heading Accession and Version

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