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    rim1 single-strand DNA-binding protein Rim1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2541933, updated on 18-Sep-2024

    Summary

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    Official Symbol
    rim1
    Official Full Name
    single-strand DNA-binding protein Rim1
    Primary source
    PomBase:SPAC2F3.04c
    Locus tag
    SPOM_SPAC2F3.04C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See rim1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    2
    Sequence:
    Chromosome: I; NC_003424.3 (3927451..3928377, complement)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene translocation subcomplex subunit Sec72 Neighboring gene DNA-directed RNA polymerase I complex subunit Rpa49 Neighboring gene xylose and arabinose reductase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene karyopherin/importin beta family nuclear import signal receptor Kap104

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene structure and biochemical characterization of mitochondrial single-stranded DNA binding protein from Schizosaccharomyces pombe. Nishio M, et al. DNA Seq, 2006 Aug. PMID 17312948
    2. A stable tetramer is not the only oligomeric state that mitochondrial single-stranded DNA binding proteins can adopt. Singh SP, et al. J Biol Chem, 2019 Mar 15. PMID 30617184, Free PMC Article
    3. The proteasome factor Bag101 binds to Rad22 and suppresses homologous recombination. Saito Y, et al. Sci Rep, 2013. PMID 23779158, Free PMC Article
    4. Pfh1 Is an Accessory Replicative Helicase that Interacts with the Replisome to Facilitate Fork Progression and Preserve Genome Integrity. McDonald KR, et al. PLoS Genet, 2016 Sep. PMID 27611590, Free PMC Article
    5. Predicting the fission yeast protein interaction network. Pancaldi V, et al. G3 (Bethesda), 2012 Apr. PMID 22540037, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables single-stranded DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables single-stranded DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial DNA replication IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in positive regulation of helicase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in mitochondrial nucleoid IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    single-strand DNA-binding protein Rim1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      3927451..3928377 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001019804.3 → NP_594383.1  single-strand DNA-binding protein Rim1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594383.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O14087
      Conserved Domains (2) summary
      COG0629
      Location:27 → 150
      Ssb; Single-stranded DNA-binding protein [Replication, recombination and repair]
      pfam00436
      Location:25 → 124
      SSB; Single-strand binding protein family
    Nucleotide Protein
    Heading Accession and Version

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