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    syb1 synaptobrevin family receptor [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2541731, updated on 22-Jun-2024

    Summary

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    Gene symbol
    syb1
    Gene description
    synaptobrevin family receptor
    Locus tag
    SPOM_SPAC6G9.11
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Old locus tag
    SPAC6G9.11
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    Genomic context

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    See syb1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    2
    Sequence:
    Chromosome: I; NC_003424.3 (3268291..3269670)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene helicase Sen1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene CHS5-like protein Cfr1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene bouquet formation protein Bqt1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Fission yeast synaptobrevin is involved in cytokinesis and cell elongation. Edamatsu M, et al. Biochem Biophys Res Commun, 2003 Feb 14. PMID 12565827
    2. The fission yeast synaptobrevin ortholog Syb1 plays an important role in forespore membrane formation and spore maturation. Yamaoka T, et al. Eukaryot Cell, 2013 Sep. PMID 23709180, Free PMC Article
    3. The Schizosaccharomyces pombe syntaxin 1 homolog, Psy1, is essential in the development of the forespore membrane. Maeda Y, et al. Biosci Biotechnol Biochem, 2009 Feb. PMID 19202289
    4. The exocytic Rabs Ypt3 and Ypt2 regulate the early step of biogenesis of the spore plasma membrane in fission yeast. Imada K, et al. Mol Biol Cell, 2016 Nov 1. PMID 27630265, Free PMC Article
    5. Deletion mutants of AP-1 adaptin subunits display distinct phenotypes in fission yeast. Ma Y, et al. Genes Cells, 2009 Aug. PMID 19624755

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. In syb1-S1 mutants, the forespore membrane begins to form but fails to develop a normal morphology.
      Title: The fission yeast synaptobrevin ortholog Syb1 plays an important role in forespore membrane formation and spore maturation.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables SNAP receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables syntaxin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in ascospore-type prospore membrane formation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in intracellular protein transport NAS
    Non-traceable Author Statement
    more info
    		  
    involved_in vesicle fusion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi apparatus HDA PubMed 
    part_of SNARE complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cell cortex of cell tip IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in cell division site IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in cell tip IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in cytoplasm HDA PubMed 
    is_active_in endosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in medial cortex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in meiotic spindle pole IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptobrevin family receptor

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      3268291..3269670
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001019544.3 → NP_594120.1  synaptobrevin family receptor [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594120.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q92356
      Conserved Domains (2) summary
      COG5143
      Location:2 → 96
      SNC1; Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
      cd15874
      Location:30 → 89
      R-SNARE_Snc1; SNARE motif of Snc1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Research Materials