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    nup85 nucleoporin Nup85 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539829, updated on 18-Sep-2024

    Summary

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    Official Symbol
    nup85
    Official Full Name
    nucleoporin Nup85
    Primary source
    PomBase:SPBC17G9.04c
    Locus tag
    SPOM_SPBC17G9.04C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    ptr5
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    Genomic context

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    See nup85 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003423.3 (2173656..2176430, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene WD repeat protein Neighboring gene ATP-dependent RNA helicase Prp16 Neighboring gene ncRNA Neighboring gene Cdc73 family RNA polymerase II accessory factor Neighboring gene ncRNA Neighboring gene lysine--tRNA (Lys) ligase Krs1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene RRM-containing cyclophilin Rct1 Neighboring gene siderophore-iron biosynthesis protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Fun30 chromatin remodeler Fft3 controls nuclear organization and chromatin structure of insulators and subtelomeres in fission yeast. Steglich B, et al. PLoS Genet, 2015 Mar. PMID 25798942, Free PMC Article
    2. RNAi keeps Atf1-bound stress response genes in check at nuclear pores. Woolcock KJ, et al. Genes Dev, 2012 Apr 1. PMID 22431512, Free PMC Article
    3. The fission yeast Nup107-120 complex functionally interacts with the small GTPase Ran/Spi1 and is required for mRNA export, nuclear pore distribution, and proper cell division. Baï SW, et al. Mol Cell Biol, 2004 Jul. PMID 15226438, Free PMC Article
    4. Quantitative analysis of nuclear pore complex organization in Schizosaccharomyces pombe. Varberg JM, et al. Life Sci Alliance, 2022 Jul. PMID 35354597, Free PMC Article
    5. Molecular basis for Nup37 and ELY5/ELYS recruitment to the nuclear pore complex. Bilokapic S, et al. Proc Natl Acad Sci U S A, 2012 Sep 18. PMID 22955883, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables euchromatin binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables structural constituent of nuclear pore IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in mRNA export from nucleus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein import into nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in ribosomal subunit export from nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    is_active_in euchromatin IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in heterochromatin IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    NOT is_active_in mitotic spindle pole body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in nuclear envelope HDA PubMed 
    is_active_in nuclear periphery IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of nuclear pore IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of nuclear pore outer ring IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of nuclear pore outer ring IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in nucleolar peripheral inclusion body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    nucleoporin Nup85

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      2173656..2176430 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021800.3 → NP_595893.1  nucleoporin Nup85 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595893.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q9UUE5
      Conserved Domains (1) summary
      pfam07575
      Location:70 → 644
      Nucleopor_Nup85; Nup85 Nucleoporin
    Nucleotide Protein
    Heading Accession and Version

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