U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    lvs1 beige protein 1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540571, updated on 17-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    lvs1
    Gene description
    beige protein 1
    Primary source
    PomBase:SPBC28E12.06c
    Locus tag
    SPBC28E12.06c
    See related
    FungiDB:SPBC28E12.06c; VEuPathDB:SPBC28E12.06c
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    SPBC3H7.16
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See lvs1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003423.3 (1846387..1854534, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene Rho-type GTPase-activating protein Rga4 Neighboring gene uncharacterized protein Neighboring gene putative U3 snoRNP-associated protein Esf2 Neighboring gene serine/threonine protein kinase Hhp1 Neighboring gene BRCT domain protein Neighboring gene putative FHA domain protein Far10

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Ypt4 and lvs1 regulate vacuolar size and function in Schizosaccharomyces pombe. Rains A, et al. Cell Logist, 2017. PMID 28944093, Free PMC Article
    2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidylinositol binding ISM
    Inferred from Sequence Model
    more info
    		  
    enables protein kinase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in autophagy ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in late endosome to vacuole transport NAS
    Non-traceable Author Statement
    more info
    		  
    involved_in protein localization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in vacuole organization IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in fungal-type vacuole ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    beige protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      1846387..1854534 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021659.3 → NP_595759.2  beige protein 1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595759.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q7LKZ7
      Conserved Domains (8) summary
      smart01026
      Location:1919 → 2202
      Beach; Beige/BEACH domain
      COG2319
      Location:2255 → 2485
      WD40; WD40 repeat [General function prediction only]
      cd01201
      Location:1738 → 1871
      PH_BEACH; Pleckstrin homology domain in BEACH domain containing proteins
      cd00065
      Location:2556 → 2600
      FYVE_like_SF; FYVE domain like superfamily
      pfam15787
      Location:715 → 837
      DUF4704; Domain of unknown function (DUF4704)
      sd00039
      Location:2255 → 2294
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:2255 → 2466
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      cl22861
      Location:380 → 534
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials