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    rtp1 RNA polymerase II nuclear import protein Rtp1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540770, updated on 22-Jun-2024

    Summary

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    Gene symbol
    rtp1
    Gene description
    RNA polymerase II nuclear import protein Rtp1
    Locus tag
    SPOM_SPBC20F10.08C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Old locus tag
    SPBC20F10.08c
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    Genomic context

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    See rtp1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003423.3 (3297527..3301262, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene NRDE-2 family protein Neighboring gene mitotic spindle checkpoint protein Mad2 Neighboring gene ncRNA Neighboring gene sterol transfer protein Ltc1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene U6 snRNP-associated protein Lsm5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    2. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein import into nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in protein secretion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    is_active_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    RNA polymerase II nuclear import protein Rtp1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      3297527..3301262 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001022293.3 → NP_596372.1  RNA polymerase II nuclear import protein Rtp1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_596372.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O42977
      Conserved Domains (1) summary
      pfam10363
      Location:527 → 625
      RTP1_C1; Required for nuclear transport of RNA pol II C-terminus 1
    Nucleotide Protein
    Heading Accession and Version

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