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    spt4 DSIF transcription elongation factor complex subunit Spt4 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540700, updated on 18-Sep-2024

    Summary

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    Official Symbol
    spt4
    Official Full Name
    DSIF transcription elongation factor complex subunit Spt4
    Primary source
    PomBase:SPBC21C3.16c
    Locus tag
    SPOM_SPBC21C3.16C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See spt4 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003423.3 (3824636..3824994, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene aldehyde dehydrogenase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene protein psg1 Neighboring gene ncRNA Neighboring gene serine/threonine protein kinase (DDK family) Spo4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the Schizosaccharomyces pombe Spt5-Spt4 complex. Schwer B, et al. RNA, 2009 Jul. PMID 19460865, Free PMC Article
    2. Interactions between fission yeast mRNA capping enzymes and elongation factor Spt5. Pei Y, et al. J Biol Chem, 2002 May 31. PMID 11893740
    3. Chromatin remodeller Fun30(Fft3) induces nucleosome disassembly to facilitate RNA polymerase II elongation. Lee J, et al. Nat Commun, 2017 Feb 20. PMID 28218250, Free PMC Article
    4. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
    5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables RNA polymerase II complex binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription elongation factor activity EXP
    Inferred from Experiment
    more info
    		 PubMed 
    enables zinc ion binding ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription elongation by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transcription elongation by RNA polymerase II IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of DSIF complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of DSIF complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in chromatin IC
    Inferred by Curator
    more info
    		 PubMed 
    is_active_in chromosome, centromeric region IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytosol HDA PubMed 
    is_active_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    DSIF transcription elongation factor complex subunit Spt4

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      3824636..3824994 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001022516.3 → NP_596596.1  DSIF transcription elongation factor complex subunit Spt4 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_596596.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q9P7K8
      Conserved Domains (1) summary
      COG5204
      Location:1 → 105
      SPT4; Transcription elongation factor SPT4 [Transcription]
    Nucleotide Protein
    Heading Accession and Version

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