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    aah2 alpha-amylase 2 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2541501, updated on 18-Sep-2024

    Summary

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    Official Symbol
    aah2
    Official Full Name
    alpha-amylase 2
    Primary source
    PomBase:SPAC23D3.14c
    Locus tag
    SPOM_SPAC23D3.14C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See aah2 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    4
    Sequence:
    Chromosome: I; NC_003424.3 (4373039..4374987, complement)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene guanyl-nucleotide exchange factor Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene cell wall alpha-1,3-glucan synthase Mok11 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide identification of fungal GPI proteins. De Groot PW, et al. Yeast, 2003 Jul 15. PMID 12845604
    2. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
    3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    4. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article
    5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe. The cytochrome b gene has an intron closely related to the first two introns in the Saccharomyces cerevisiae cox1 gene. Lang BF, et al. J Mol Biol, 1985 Aug 5. PMID 4046021

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables alpha-amylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in fungal-type cell wall biogenesis ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    is_active_in external side of plasma membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-amylase 2

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      4373039..4374987 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001019980.1 → NP_594551.1  alpha-amylase 2 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594551.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q09840
      Conserved Domains (3) summary
      cd11319
      Location:26 → 403
      AmyAc_euk_AmyA; Alpha amylase catalytic domain found in eukaryotic Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase)
      pfam00128
      Location:66 → 369
      Alpha-amylase; Alpha amylase, catalytic domain
      pfam09260
      Location:420 → 497
      DUF1966; Domain of unknown function (DUF1966)
    Nucleotide Protein
    Heading Accession and Version

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