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    bdp1 transcription factor TFIIIB complex subunit Bdp1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2538909, updated on 18-Sep-2024

    Summary

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    Official Symbol
    bdp1
    Official Full Name
    transcription factor TFIIIB complex subunit Bdp1
    Primary source
    PomBase:SPCC1919.14c
    Locus tag
    SPOM_SPCC1919.14C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    spB''
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    Genomic context

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    See bdp1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    5
    Sequence:
    Chromosome: III; NC_003421.2 (2237405..2239355, complement)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene aminopeptidase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene rRNA (uridine-N3-)-methyltransferase Bmt5 Neighboring gene ncRNA Neighboring gene histone H2B-K119 ubiquitin ligase complex (HULC) subunit, ubiquitin-protein ligase E3 Brl1 Neighboring gene ncRNA Neighboring gene ubiquitin-protein ligase E3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interaction between TBP and Condensin Drives the Organization and Faithful Segregation of Mitotic Chromosomes. Iwasaki O, et al. Mol Cell, 2015 Sep 3. PMID 26257282, Free PMC Article
    2. Predicting the fission yeast protein interaction network. Pancaldi V, et al. G3 (Bethesda), 2012 Apr. PMID 22540037, Free PMC Article
    3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables DNA binding ISM
    Inferred from Sequence Model
    more info
    		  
    enables RNA polymerase III general transcription initiation factor activity IC
    Inferred by Curator
    more info
    		  
    enables TFIIIC-class transcription factor complex binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA polymerase III preinitiation complex assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus HDA PubMed 
    part_of transcription factor TFIIIB complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    transcription factor TFIIIB complex subunit Bdp1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      2237405..2239355 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001023486.3 → NP_588496.2  transcription factor TFIIIB complex subunit Bdp1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_588496.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O94481
      Conserved Domains (2) summary
      COG5118
      Location:14 → 520
      BDP1; Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
      pfam15963
      Location:375 → 458
      Myb_DNA-bind_7; Myb DNA-binding like
    Nucleotide Protein
    Heading Accession and Version

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