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    ogm4 ER membrane O-mannosyltransferase Ogm4 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539761, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ogm4
    Official Full Name
    ER membrane O-mannosyltransferase Ogm4
    Primary source
    PomBase:SPBC16C6.09
    Locus tag
    SPOM_SPBC16C6.09
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    oma4
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    Genomic context

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    See ogm4 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003423.3 (4346559..4349272)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ubiquinol-cytochrome-c reductase complex subunit 8 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene heterochromatin (HP1) family chromodomain protein Chp2 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Protein O-mannosylation is crucial for cell wall integrity, septation and viability in fission yeast. Willer T, et al. Mol Microbiol, 2005 Jul. PMID 15948957
    2. Characterization of O-mannosyltransferase family in Schizosaccharomyces pombe. Tanaka N, et al. Biochem Biophys Res Commun, 2005 May 13. PMID 15809069
    3. High-Throughput Identification of Nuclear Envelope Protein Interactions in Schizosaccharomyces pombe Using an Arrayed Membrane Yeast-Two Hybrid Library. Varberg JM, et al. G3 (Bethesda), 2020 Dec 3. PMID 33109728, Free PMC Article
    4. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
    5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables glycosyltransferase activity EXP
    Inferred from Experiment
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein O-linked glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein O-linked mannosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in endomembrane system IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in endoplasmic reticulum HDA PubMed 
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in endoplasmic reticulum membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ER membrane O-mannosyltransferase Ogm4

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      4346559..4349272
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001023828.3 → NP_596807.1  ER membrane O-mannosyltransferase Ogm4 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_596807.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O42933, Q9US82
      Conserved Domains (4) summary
      smart00472
      Location:337 → 396
      MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
      COG1928
      Location:37 → 776
      PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
      pfam02366
      Location:63 → 310
      PMT; Dolichyl-phosphate-mannose-protein mannosyltransferase
      pfam16192
      Location:549 → 770
      PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials