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    scw1 RNA-binding protein Scw1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539358, updated on 18-Sep-2024

    Summary

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    Official Symbol
    scw1
    Official Full Name
    RNA-binding protein Scw1
    Primary source
    PomBase:SPCC16C4.07
    Locus tag
    SPOM_SPCC16C4.07
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See scw1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    1
    Sequence:
    Chromosome: III; NC_003421.2 (673476..675251)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene tRNA pseudouridine synthase Neighboring gene Rnase P/MRP subunit Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene p21-activated protein kinase inhibitor Skb15 Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Rho-GEF Gef3 interacts with the septin complex and activates the GTPase Rho4 during fission yeast cytokinesis. Wang N, et al. Mol Biol Cell, 2015 Jan 15. PMID 25411334, Free PMC Article
    2. The Scw1 RNA-binding domain protein regulates septation and cell-wall structure in fission yeast. Karagiannis J, et al. Genetics, 2002 Sep. PMID 12242222, Free PMC Article
    3. Scw1p antagonizes the septation initiation network to regulate septum formation and cell separation in the fission yeast Schizosaccharomyces pombe. Jin QW, et al. Eukaryot Cell, 2003 Jun. PMID 12796296, Free PMC Article
    4. Cell-type specific regulator RBPMS switches alternative splicing via higher-order oligomerization and heterotypic interactions with other splicing regulators. Yang Y, et al. Nucleic Acids Res, 2023 Oct 13. PMID 37548402, Free PMC Article
    5. Cooperation between the septins and the actomyosin ring and role of a cell-integrity pathway during cell division in fission yeast. Wu JQ, et al. Genetics, 2010 Nov. PMID 20739711, Free PMC Article

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA processing ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm HDA PubMed 
    is_active_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein Scw1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      673476..675251
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001022908.2 → NP_587917.1  RNA-binding protein Scw1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_587917.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O74452
      Conserved Domains (2) summary
      COG0724
      Location:347 → 485
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12245
      Location:424 → 502
      RRM_scw1_like; RNA recognition motif in yeast cell wall integrity protein scw1 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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