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    ATR1 borate transporter [ Saccharomyces cerevisiae S288C ]

    Gene ID: 854924, updated on 17-May-2024

    Summary

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    Gene symbol
    ATR1
    Gene description
    borate transporter
    Primary source
    FungiDB:YML116W
    Locus tag
    YML116W
    See related
    SGD:S000004584; AllianceGenome:SGD:S000004584; VEuPathDB:YML116W
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Also known as
    SNQ1
    Summary
    Enables borate efflux transmembrane transporter activity. Involved in borate transport. Located in plasma membrane and vacuole. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See ATR1 in Genome Data Viewer
    Location:
    chromosome: XIII
    Exon count:
    1
    Sequence:
    Chromosome: XIII; NC_001145.3 (38196..39824)

    Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene 3'-5' poly(A) RNA exonuclease Neighboring gene Nab6p Neighboring gene Van1p Neighboring gene Taf8p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001145.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Microarray karyotyping of commercial wine yeast strains reveals shared, as well as unique, genomic signatures. Dunn B, et al. BMC Genomics, 2005 Apr 16. PMID 15833139, Free PMC Article
    2. Allelism of SNQ1 and ATR1, genes of the yeast Saccharomyces cerevisiae required for controlling sensitivity to 4-nitroquinoline-N-oxide and aminotriazole. Gömpel-Klein P, et al. Curr Genet, 1990 Jul. PMID 2123132
    3. Boron demanding tissues of Brassica napus express specific sets of functional Nodulin26-like Intrinsic Proteins and BOR1 transporters. Diehn TA, et al. Plant J, 2019 Oct. PMID 31148338, Free PMC Article
    4. Saccharomyces cerevisiae basic region-leucine zipper protein regulatory networks converge at the ATR1 structural gene. Coleman ST, et al. J Biol Chem, 1997 Sep 12. PMID 9287330
    5. ATR1, a Saccharomyces cerevisiae gene encoding a transmembrane protein required for aminotriazole resistance. Kanazawa S, et al. Mol Cell Biol, 1988 Feb. PMID 3280970, Free PMC Article

    See all (30) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data suggest that Atr1 functions as a boron efflux pump and is required for boron tolerance
      Title: Identification of a novel system for boron transport: Atr1 is a main boron exporter in yeast.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables borate efflux transmembrane transporter activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in borate transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in borate transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cell periphery HDA PubMed 
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    located_in vacuole IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    borate transporter
    NP_013591.1
    • Multidrug efflux pump of the major facilitator superfamily; required for resistance to aminotriazole and 4-nitroquinoline-N-oxide; ATR1 has a paralog, YMR279C, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001145.3 Reference assembly

      Range
      38196..39824
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001182478.1 → NP_013591.1  TPA: borate transporter [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_013591.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6W0G8, P13090
      UniProtKB/TrEMBL
      A0A8H4F827, A6ZLU8, B3LLE3, C7GV98, C8ZE87, G2WJU0, N1P065
      Conserved Domains (1) summary
      cd17476
      Location:73 → 517
      MFS_Amf1_MDR_like; Saccharomyces cerevisiae low affinity ammonium transporter Amf1p/YOR378W, aminotriazole resistance protein Atr1p, and similar transporters of the Major Facilitator Superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P13090.2

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