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    pof5 F-box protein Pof5 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542810, updated on 18-Sep-2024

    Summary

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    Official Symbol
    pof5
    Official Full Name
    F-box protein Pof5
    Primary source
    PomBase:SPAC6F6.02c
    Locus tag
    SPOM_SPAC6F6.02C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See pof5 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (2732373..2733860, complement)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene plasma membrane calcium ion import channel Cch1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ribosome export GTPase Neighboring gene transporter Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and characterization of a novel F-box protein Pof10 in fission yeast. Ikebe C, et al. Biochem Biophys Res Commun, 2002 Feb 8. PMID 11820777
    2. CAND1 controls in vivo dynamics of the cullin 1-RING ubiquitin ligase repertoire. Wu S, et al. Nat Commun, 2013. PMID 23535663, Free PMC Article
    3. Molecular interactions of fission yeast Skp1 and its role in the DNA damage checkpoint. Lehmann A, et al. Genes Cells, 2004 May. PMID 15147268
    4. Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes. Dixon SJ, et al. Proc Natl Acad Sci U S A, 2008 Oct 28. PMID 18931302, Free PMC Article
    5. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables ubiquitin-like ligase-substrate adaptor activity ISM
    Inferred from Sequence Model
    more info
    		  
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IC
    Inferred by Curator
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of ubiquitin ligase complex ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box protein Pof5

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      2732373..2733860 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001019325.3 → NP_593895.1  F-box protein Pof5 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_593895.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O14235
      Conserved Domains (2) summary
      smart00367
      Location:195 → 219
      LRR_CC; Leucine-rich repeat - CC (cysteine-containing) subfamily
      sd00034
      Location:100 → 123
      LRR_AMN1; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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