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    spf30 splicing factor Spf30 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2538711, updated on 18-Sep-2024

    Summary

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    Official Symbol
    spf30
    Official Full Name
    splicing factor Spf30
    Primary source
    PomBase:SPCC1281.02c
    Locus tag
    SPOM_SPCC1281.02C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See spf30 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    1
    Sequence:
    Chromosome: III; NC_003421.2 (1382055..1383544, complement)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene cell wall alpha-1,3-glucan synthase Ags1 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene chaperone EMC4 Neighboring gene pyridoxal reductase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Splicing factor Spf30 assists exosome-mediated gene silencing in fission yeast. Bernard P, et al. Mol Cell Biol, 2010 Mar. PMID 20028739, Free PMC Article
    2. TDRD3 is an effector molecule for arginine-methylated histone marks. Yang Y, et al. Mol Cell, 2010 Dec 22. PMID 21172665, Free PMC Article
    3. Dim1p is required for efficient splicing and export of mRNA encoding lid1p, a component of the fission yeast anaphase-promoting complex. Carnahan RH, et al. Eukaryot Cell, 2005 Mar. PMID 15755920, Free PMC Article
    4. The histone variant H2A.Z promotes splicing of weak introns. Nissen KE, et al. Genes Dev, 2017 Apr 1. PMID 28446597, Free PMC Article
    5. Systematic two-hybrid and comparative proteomic analyses reveal novel yeast pre-mRNA splicing factors connected to Prp19. Ren L, et al. PLoS One, 2011 Feb 28. PMID 21386897, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in spliceosomal tri-snRNP complex assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    splicing factor Spf30

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      1382055..1383544 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001023155.3 → NP_588166.1  splicing factor Spf30 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_588166.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O94519
      Conserved Domains (1) summary
      smart00333
      Location:75 → 136
      TUDOR; Tudor domain
    Nucleotide Protein
    Heading Accession and Version

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