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    eaf1 RNA polymerase II transcription elongation factor Eaf1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539104, updated on 18-Sep-2024

    Summary

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    Official Symbol
    eaf1
    Official Full Name
    RNA polymerase II transcription elongation factor Eaf1
    Primary source
    PomBase:SPCC1223.10c
    Locus tag
    SPOM_SPCC1223.10C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See eaf1 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    4
    Sequence:
    Chromosome: III; NC_003421.2 (1860467..1861936, complement)

    Chromosome III - NC_003421.2Genomic Context describing neighboring genes Neighboring gene uricase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNA-Gln

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003421.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The amino-terminal domain of ELL transcription elongation factor is essential for ELL function in Schizosaccharomyces pombe. Sweta K, et al. Microbiology (Reading), 2017 Nov. PMID 29043956
    2. Structure function characterization of the ELL Associated Factor (EAF) from Schizosaccharomyces pombe. Dabas P, et al. Gene, 2018 Jan 30. PMID 29032152
    3. Schizosaccharomyces pombe Pol II transcription elongation factor ELL functions as part of a rudimentary super elongation complex. Gopalan S, et al. Nucleic Acids Res, 2018 Nov 2. PMID 30102332, Free PMC Article
    4. Identification and Characterization of a Schizosaccharomyces pombe RNA Polymerase II Elongation Factor with Similarity to the Metazoan Transcription Factor ELL. Banks CA, et al. J Biol Chem, 2007 Feb 23. PMID 17150956
    5. Conservation and rewiring of functional modules revealed by an epistasis map in fission yeast. Roguev A, et al. Science, 2008 Oct 17. PMID 18818364, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription elongation factor activity EXP
    Inferred from Experiment
    more info
    		 PubMed 
    enables transcription elongation factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in transcription elongation by RNA polymerase II EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in transcription elongation by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transcription elongation by RNA polymerase II IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in transcription elongation by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of super elongation complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of transcription elongation factor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    RNA polymerase II transcription elongation factor Eaf1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003421.2 Reference assembly

      Range
      1860467..1861936 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001355938.2 → NP_001343024.1  RNA polymerase II transcription elongation factor Eaf1 [Schizosaccharomyces pombe]

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      A0ZWU1
      Conserved Domains (1) summary
      pfam09816
      Location:9 → 107
      EAF; RNA polymerase II transcription elongation factor
    Nucleotide Protein
    Heading Accession and Version

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