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    gar1 H/ACA snoRNP pseudouridylase subunit Gar1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540705, updated on 18-Sep-2024

    Summary

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    Official Symbol
    gar1
    Official Full Name
    H/ACA snoRNP pseudouridylase subunit Gar1
    Primary source
    PomBase:SPBC20F10.01
    Locus tag
    SPOM_SPBC20F10.01
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    SPBC25H2.01c
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    Genomic context

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    See gar1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    3
    Sequence:
    Chromosome: II; NC_003423.3 (3283337..3284486)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol synthesis protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene threonine--tRNA (Thr) ligase Trs1 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The SpGAR1 gene of Schizosaccharomyces pombe encodes the functional homologue of the snoRNP protein GAR1 of Saccharomyces cerevisiae. Girard JP, et al. Nucleic Acids Res, 1993 May 11. PMID 8502556, Free PMC Article
    2. Mitosis-specific phosphorylation of gar2, a fission yeast nucleolar protein structurally related to nucleolin. Gulli MP, et al. Chromosoma, 1997 Jun. PMID 9211981
    3. gar2 is a nucleolar protein from Schizosaccharomyces pombe required for 18S rRNA and 40S ribosomal subunit accumulation. Gulli MP, et al. Nucleic Acids Res, 1995 Jun 11. PMID 7596817, Free PMC Article
    4. Regulation of the nuclear poly(A)-binding protein by arginine methylation in fission yeast. Perreault A, et al. J Biol Chem, 2007 Mar 9. PMID 17213188
    5. Poly(A) tail-mediated gene regulation by opposing roles of Nab2 and Pab2 nuclear poly(A)-binding proteins in pre-mRNA decay. Grenier St-Sauveur V, et al. Mol Cell Biol, 2013 Dec. PMID 24081329, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables box H/ACA snoRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in snRNA pseudouridine synthesis ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in snoRNA guided rRNA pseudouridine synthesis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of box H/ACA snoRNP complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    H/ACA snoRNP pseudouridylase subunit Gar1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      3283337..3284486
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001022286.3 → NP_596365.1  H/ACA snoRNP pseudouridylase subunit Gar1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_596365.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q06975
      Conserved Domains (1) summary
      pfam04410
      Location:20 → 128
      Gar1; Gar1/Naf1 RNA binding region
    Nucleotide Protein
    Heading Accession and Version

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