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    SPBC16G5.07c putative prohibitin [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539877, updated on 17-May-2024

    Summary

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    Gene symbol
    SPBC16G5.07c
    Gene description
    putative prohibitin
    Primary source
    PomBase:SPBC16G5.07c
    Locus tag
    SPBC16G5.07c
    See related
    FungiDB:SPBC16G5.07c; VEuPathDB:SPBC16G5.07c
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See SPBC16G5.07c in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    3
    Sequence:
    Chromosome: II; NC_003423.3 (4223952..4225758, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene putative ubiquitin-protein ligase E3 Neighboring gene putative VAP family protein Neighboring gene putative mitochondrial ribosomal protein subunit L13 Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene putative phosphoribosylanthranilate transferase Trp4 Neighboring gene putative serine carboxypeptidase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Hierarchical modularity and the evolution of genetic interactomes across species. Ryan CJ, et al. Mol Cell, 2012 Jun 8. PMID 22681890, Free PMC Article
    2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in mitochondrial membrane organization ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in mitochondrion organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in mitochondrial inner membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in mitochondrion HDA PubMed 
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    putative prohibitin

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      4223952..4225758 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001023776.2 → NP_596756.1  putative prohibitin [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_596756.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O60121
      Conserved Domains (3) summary
      smart00244
      Location:52 → 209
      PHB; prohibitin homologues
      cd08829
      Location:89 → 199
      SPFH_paraslipin; Paraslipin or slipin-2 (SLP-2, a subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily
      pfam16200
      Location:275 → 337
      Band_7_C; C-terminal region of band_7
    Nucleotide Protein
    Heading Accession and Version

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