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    LINC02900 long intergenic non-protein coding RNA 2900 [ Homo sapiens (human) ]

    Gene ID: 340073, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC02900provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2900provided by HGNC
    Primary source
    HGNC:HGNC:27964
    See related
    Ensembl:ENSG00000249647 AllianceGenome:HGNC:27964
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C5orf66-AS2
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02900 in Genome Data Viewer
    Location:
    5q31.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (135236234..135248177, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (135763290..135775233, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (134571924..134583867, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:134384389-134384989 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:134386169-134386753 Neighboring gene PITX1 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23167 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:134401324-134402015 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:134403398-134404087 Neighboring gene esophagus epithelial intergenic associated transcript Neighboring gene uncharacterized LOC124901072 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:134470142-134471024 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:134471025-134471907 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:134509397-134509555 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16372 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:134549501-134550001 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:134563187-134563687 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:134565392-134565953 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23168 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23169 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:134574510-134575316 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:134582317-134583516 Neighboring gene MPRA-validated peak5478 silencer Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:134678129-134679328 Neighboring gene macroH2A.1 histone Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23170 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16373 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16374 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16375 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:134735167-134735672 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr5:134735673-134736178 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:134739095-134739661 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23171 Neighboring gene VISTA enhancer hs1473 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23172 Neighboring gene dendritic cell associated nuclear protein 1 Neighboring gene TIFA inhibitor

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037895.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC010238, BC045187
      Related
      ENST00000505663.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      135236234..135248177 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      135763290..135775233 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)