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    LINC01148 long intergenic non-protein coding RNA 1148 [ Homo sapiens (human) ]

    Gene ID: 283585, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC01148provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1148provided by HGNC
    Primary source
    HGNC:HGNC:27507
    See related
    Ensembl:ENSG00000258804 AllianceGenome:HGNC:27507
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01148 in Genome Data Viewer
    Location:
    14q31.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (86905778..86922755)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (81126771..81143756)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (87372122..87389099)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2328 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_38386 Neighboring gene long intergenic non-protein coding RNA 2316 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:86545921-86546560 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:86546561-86547199 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:86567507-86568008 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:86582175-86582676 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_38415 Neighboring gene Sharpr-MPRA regulatory region 9105 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:86829973-86830473 Neighboring gene ReSE screen-validated silencer GRCh37_chr14:86845197-86845432 Neighboring gene long intergenic non-protein coding RNA 2309 Neighboring gene NANOG hESC enhancer GRCh37_chr14:87241177-87241678 Neighboring gene NANOG hESC enhancer GRCh37_chr14:87475731-87476275 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:87483369-87484231 Neighboring gene NANOG hESC enhancer GRCh37_chr14:87486385-87486995 Neighboring gene uncharacterized LOC105370608 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr14:87599502-87600701 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:87621174-87621674 Neighboring gene NANOG hESC enhancer GRCh37_chr14:87623147-87623726 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:87636358-87637056 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:87652958-87653633 Neighboring gene NANOG hESC enhancer GRCh37_chr14:87701004-87701521 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:87706805-87707606 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:87726633-87727391 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr14:87809385-87810584 Neighboring gene long intergenic non-protein coding RNA 2296 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:87896478-87897677

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038445.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL391517
      Related
      ENST00000557527.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      86905778..86922755
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      81126771..81143756
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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