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    FRG1CP FSHD region gene 1 family member C, pseudogene [ Homo sapiens (human) ]

    Gene ID: 100289097, updated on 17-Sep-2024

    Summary

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    Official Symbol
    FRG1CPprovided by HGNC
    Official Full Name
    FSHD region gene 1 family member C, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:51762
    See related
    Ensembl:ENSG00000282826 AllianceGenome:HGNC:51762
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in gall bladder (RPKM 12.8), small intestine (RPKM 10.9) and 25 other tissues See more
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    Genomic context

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    See FRG1CP in Genome Data Viewer
    Location:
    20q11.1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (28580633..28602665, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (29562016..29584048)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:26188387-26188888 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:26189772-26190332 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:26214685-26215184 Neighboring gene uncharacterized LOC124904967 Neighboring gene NANOG hESC enhancer GRCh37_chr20:26280570-26281071 Neighboring gene MIR663A host gene Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:26313876-26314454 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:26318213-26318766 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr20:26314455-26315031 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:26313298-26313875 Neighboring gene microRNA 663a Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17681 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17682 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12755 Neighboring gene RNA, 5.8S ribosomal pseudogene Neighboring gene FSHD region gene 1 family member D, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Proteomic analysis of HIV-1 Gag interacting partners using proximity-dependent biotinylation. Le Sage V, et al. Virol J, 2015 Sep 11. PMID 26362536, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Clone Names

    • FLJ32537

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_132315.1 RNA Sequence

      Status: INFERRED

      Source sequence(s)
      ABBA01014710
      Related
      ENST00000358464.11

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      28580633..28602665 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      29562016..29584048
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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