U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    GLCCI1-DT GLCCI1 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 100505921, updated on 17-Aug-2024

    Summary

    Official Symbol
    GLCCI1-DTprovided by HGNC
    Official Full Name
    GLCCI1 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:40852
    See related
    AllianceGenome:HGNC:40852
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 7.4) and thyroid (RPKM 0.4) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See GLCCI1-DT in Genome Data Viewer
    Location:
    7p21.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (7949839..7968752, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (8068359..8087268, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (7989470..8008383, complement)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901586 Neighboring gene RNA, U6 small nuclear 534, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25650 Neighboring gene cyclin B2 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25651 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17965 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25652 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17966 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17967 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17968 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17969 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25653 Neighboring gene peptidylprolyl isomerase like 4 pseudogene Neighboring gene glucocorticoid induced 1 Neighboring gene MPRA-validated peak6363 silencer Neighboring gene uncharacterized LOC105375142

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110018.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC006042, AI223166, BQ441241

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      7949839..7968752 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      8068359..8087268 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)