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    LYPLA2P1 LYPLA2 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 653639, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LYPLA2P1provided by HGNC
    Official Full Name
    LYPLA2 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:21069
    See related
    AllianceGenome:HGNC:21069
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    APT; LYPLA2L; dJ570F3.6
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    Genomic context

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    See LYPLA2P1 in Genome Data Viewer
    Location:
    6p21.32
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (33364737..33366362, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (33186099..33187724, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (33332514..33334139, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901303 Neighboring gene small integral membrane protein 40 Neighboring gene MYL12B pseudogene 3 Neighboring gene MPRA-validated peak5757 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:33316599-33317100 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:33317101-33317600 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:33322798-33323394 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:33325184-33325780 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:33330150-33330334 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:33331653-33332152 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:33332216-33332916 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:33332917-33333615 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:33343116-33343616 Neighboring gene ribosomal protein L35a pseudogene 4 Neighboring gene kinesin family member C1 Neighboring gene ribosomal protein L12 pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Involvement of the Src homology 2-containing tyrosine phosphatase SHP-2 in growth hormone signaling. Kim SO, et al. J Biol Chem, 1998 Jan 23. PMID 9442080
    2. Interactome analysis reveals that lncRNA HULC promotes aerobic glycolysis through LDHA and PKM2. Wang C, et al. Nat Commun, 2020 Jun 22. PMID 32572027, Free PMC Article
    3. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. Barcellos LF, et al. PLoS Genet, 2009 Oct. PMID 19851445, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Observational study of gene-disease association. (HuGE Navigator)
      Title: High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • lysophospholipase 2 like
    • lysophospholipase II pseudogene 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_027926.2 

      Range
      101..1726
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      33364737..33366362 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_167244.2 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      4669391..4671016 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_2

    Genomic

    1. NT_113891.3 Reference GRCh38.p14 ALT_REF_LOCI_2

      Range
      4776222..4777847 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_5

    Genomic

    1. NT_167247.2 Reference GRCh38.p14 ALT_REF_LOCI_5

      Range
      4800675..4802300 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_6

    Genomic

    1. NT_167248.2 Reference GRCh38.p14 ALT_REF_LOCI_6

      Range
      4559159..4560784 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      33186099..33187724 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_001444.3: Suppressed sequence

      Description
      NR_001444.3: This RefSeq was permanently suppressed because there is insufficient evidence that this pseudogene locus is transcribed.
    Nucleotide Protein
    Heading Accession and Version

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