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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001167667.3 → NP_001161139.1 cadherin-18 isoform 2 precursor
See identical proteins and their annotated locations for NP_001161139.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate splice site in the 3' coding region, which results in a frameshift, compared to variant 1. It encodes isoform 2, which has a shorter and distinct C-terminus, compared to isoform 1. Variant 2 and 9 encode the same protein (isoform 2). This isoform (2) may undergo proteolytic processing similar to isoform 1.
- Source sequence(s)
-
AC025173, AC118463, AK295087, CR747663, DA132038, DA368944, U59325
- Consensus CDS
-
CCDS54835.1
- UniProtKB/TrEMBL
-
D6RIH8
- Related
- ENSP00000422138.1, ENST00000502796.5
- Conserved Domains (2) summary
-
- cd11304
Location:387 → 484
- Cadherin_repeat; Cadherin tandem repeat domain
- smart00112
Location:79 → 157
- CA; Cadherin repeats
-
NM_001291956.3 → NP_001278885.1 cadherin-18 isoform 1 preproprotein
See identical proteins and their annotated locations for NP_001278885.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Variants 1, 3, 5, 6, and 7 encode the same protein (isoform 1).
- Source sequence(s)
-
AC025173, AC118463, AK289547, CR747663, DA132038, DC310391, U59325
- Consensus CDS
-
CCDS3889.1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
- Related
- ENSP00000425093.1, ENST00000507958.5
- Conserved Domains (3) summary
-
- cd11304
Location:387 → 484
- Cadherin_repeat; Cadherin tandem repeat domain
- smart00112
Location:79 → 157
- CA; Cadherin repeats
- pfam01049
Location:637 → 783
- Cadherin_C; Cadherin cytoplasmic region
-
NM_001291957.2 → NP_001278886.1 cadherin-18 isoform 3 precursor
See identical proteins and their annotated locations for NP_001278886.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR and has an alternate splice site in the 3' coding region, which results in a frameshift, compared to variant 1. It encodes isoform 3, which has a shorter and distinct C-terminus, compared to isoform 1. Variant 4 and 8 encode the same protein (isoform 3). This isoform (3) may undergo proteolytic processing similar to isoform 1.
- Source sequence(s)
-
AC025173, AC118463, AK295087, AK308745, BC031051, CA425592, CR747663, DA132038
- Consensus CDS
-
CCDS75229.1
- UniProtKB/TrEMBL
- D6RER2, D6RIH8
- Related
- ENSP00000424931.1, ENST00000506372.5
- Conserved Domains (2) summary
-
- cd11304
Location:387 → 484
- Cadherin_repeat; Cadherin tandem repeat domain
- smart00112
Location:79 → 157
- CA; Cadherin repeats
-
NM_001349556.2 → NP_001336485.1 cadherin-18 isoform 1 preproprotein
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 1. Variants 1, 3, 5, 6, and 7 encode the same protein (isoform 1).
- Source sequence(s)
-
AC025173, AC118463, AK289547, CR747663, DA132038, DC310391, U59325
- Consensus CDS
-
CCDS3889.1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
- Conserved Domains (3) summary
-
- cd11304
Location:387 → 484
- Cadherin_repeat; Cadherin tandem repeat domain
- smart00112
Location:79 → 157
- CA; Cadherin repeats
- pfam01049
Location:637 → 783
- Cadherin_C; Cadherin cytoplasmic region
-
NM_001349558.2 → NP_001336487.1 cadherin-18 isoform 1 preproprotein
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR compared to variant 1. Variants 1, 3, 5, 6, and 7 encode the same protein (isoform 1).
- Source sequence(s)
-
AC025173, AC094103, AC118463, AK289547, CR747663, DA132038, DC310391, U59325
- Consensus CDS
-
CCDS3889.1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
- Conserved Domains (3) summary
-
- cd11304
Location:387 → 484
- Cadherin_repeat; Cadherin tandem repeat domain
- smart00112
Location:79 → 157
- CA; Cadherin repeats
- pfam01049
Location:637 → 783
- Cadherin_C; Cadherin cytoplasmic region
-
NM_001349559.2 → NP_001336488.1 cadherin-18 isoform 1 preproprotein
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) differs in the 5' UTR compared to variant 1. Variants 1, 3, 5, 6, and 7 encode the same protein (isoform 1).
- Source sequence(s)
-
AC025173, AC118463, BC031051, CR747663, DA132038, DA181710, U59325
- Consensus CDS
-
CCDS3889.1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
- Conserved Domains (3) summary
-
- cd11304
Location:387 → 484
- Cadherin_repeat; Cadherin tandem repeat domain
- smart00112
Location:79 → 157
- CA; Cadherin repeats
- pfam01049
Location:637 → 783
- Cadherin_C; Cadherin cytoplasmic region
-
NM_001349560.2 → NP_001336489.1 cadherin-18 isoform 3 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (8) differs in the 5' UTR and uses an alternate splice site in the 3' coding region, which results in a frameshift, compared to variant 1. It encodes isoform 3, which has a shorter and distinct C-terminus, compared to isoform 1. Variant 4 and 8 encode the same protein (isoform 3). This isoform (3) may undergo proteolytic processing similar to isoform 1.
- Source sequence(s)
-
AC025173, AC118463, AK295087, CK005847, CR747663, DA132038, DA181710, U59325
- Consensus CDS
-
CCDS75229.1
- UniProtKB/TrEMBL
- D6RER2, D6RIH8
- Conserved Domains (2) summary
-
- cd11304
Location:387 → 484
- Cadherin_repeat; Cadherin tandem repeat domain
- smart00112
Location:79 → 157
- CA; Cadherin repeats
-
NM_001349561.2 → NP_001336490.1 cadherin-18 isoform 2 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (9) differs in the 5' UTR and uses an alternate splice site in the 3' coding region, which results in a frameshift, compared to variant 1. It encodes isoform 2, which has a shorter and distinct C-terminus, compared to isoform 1. Variant 2 and 9 encode the same protein (isoform 2). This isoform (2) may undergo proteolytic processing similar to isoform 1.
- Source sequence(s)
-
AC025173, AC118463, AK295087, CR747663, DA132038, DA368944, U59325
- Consensus CDS
-
CCDS54835.1
- UniProtKB/TrEMBL
-
D6RIH8
- Conserved Domains (2) summary
-
- cd11304
Location:387 → 484
- Cadherin_repeat; Cadherin tandem repeat domain
- smart00112
Location:79 → 157
- CA; Cadherin repeats
-
NM_001349562.2 → NP_001336491.1 cadherin-18 isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (10) differs in the 5' UTR and uses a downstream start codon compared to variant 1. It encodes isoform 4 which has a shorter N-terminus compared to isoform 1. Variants 11 and 12 encode the same protein (isoform 4).
- Source sequence(s)
-
AC025173, AC113397, AC118463, CR747663, DA132038, DC343148, U59325
- Conserved Domains (3) summary
-
- cd11304
Location:164 → 261
- Cadherin_repeat; Cadherin tandem repeat domain
- smart00112
Location:2 → 43
- CA; Cadherin repeats
- pfam01049
Location:414 → 560
- Cadherin_C; Cadherin cytoplasmic region
-
NM_001349563.2 → NP_001336492.1 cadherin-18 isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (11) contains an alternate exon in the 5' region, which results in the use of a downstream start codon compared to variant 1. It encodes isoform 4 which has a shorter N-terminus compared to isoform 1. Variants 11 and 12 encode the same protein (isoform 4).
- Source sequence(s)
-
AC025173, AC113397, AC118463, BC031051, CR747663, DA132038, DA368944, U59325
- Conserved Domains (3) summary
-
- cd11304
Location:164 → 261
- Cadherin_repeat; Cadherin tandem repeat domain
- smart00112
Location:2 → 43
- CA; Cadherin repeats
- pfam01049
Location:414 → 560
- Cadherin_C; Cadherin cytoplasmic region
-
NM_004934.5 → NP_004925.1 cadherin-18 isoform 1 preproprotein
See identical proteins and their annotated locations for NP_004925.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1). Variants 1, 3, 5, 6, and 7 encode the same protein (isoform 1).
- Source sequence(s)
-
AC025173, AC118463, BC031051, CR747663, DA132038, DA368944, U59325
- Consensus CDS
-
CCDS3889.1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
- Related
- ENSP00000371710.1, ENST00000382275.6
- Conserved Domains (3) summary
-
- cd11304
Location:387 → 484
- Cadherin_repeat; Cadherin tandem repeat domain
- smart00112
Location:79 → 157
- CA; Cadherin repeats
- pfam01049
Location:637 → 783
- Cadherin_C; Cadherin cytoplasmic region
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000005.10 Reference GRCh38.p14 Primary Assembly
- Range
-
19471296..20575713 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_005248228.5 → XP_005248285.1 cadherin-18 isoform X1
See identical proteins and their annotated locations for XP_005248285.1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
- Conserved Domains (3) summary
-
- cd11304
Location:387 → 484
- Cadherin_repeat; Cadherin tandem repeat domain
- smart00112
Location:79 → 157
- CA; Cadherin repeats
- pfam01049
Location:637 → 783
- Cadherin_C; Cadherin cytoplasmic region
-
XM_017008924.3 → XP_016864413.1 cadherin-18 isoform X1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
- Conserved Domains (3) summary
-
- cd11304
Location:387 → 484
- Cadherin_repeat; Cadherin tandem repeat domain
- smart00112
Location:79 → 157
- CA; Cadherin repeats
- pfam01049
Location:637 → 783
- Cadherin_C; Cadherin cytoplasmic region
-
XM_017008928.3 → XP_016864417.1 cadherin-18 isoform X1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
- Conserved Domains (3) summary
-
- cd11304
Location:387 → 484
- Cadherin_repeat; Cadherin tandem repeat domain
- smart00112
Location:79 → 157
- CA; Cadherin repeats
- pfam01049
Location:637 → 783
- Cadherin_C; Cadherin cytoplasmic region
-
XM_017008926.3 → XP_016864415.1 cadherin-18 isoform X1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
- Conserved Domains (3) summary
-
- cd11304
Location:387 → 484
- Cadherin_repeat; Cadherin tandem repeat domain
- smart00112
Location:79 → 157
- CA; Cadherin repeats
- pfam01049
Location:637 → 783
- Cadherin_C; Cadherin cytoplasmic region
-
XM_017008927.3 → XP_016864416.1 cadherin-18 isoform X1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
- Conserved Domains (3) summary
-
- cd11304
Location:387 → 484
- Cadherin_repeat; Cadherin tandem repeat domain
- smart00112
Location:79 → 157
- CA; Cadherin repeats
- pfam01049
Location:637 → 783
- Cadherin_C; Cadherin cytoplasmic region
-
XM_017008929.3 → XP_016864418.1 cadherin-18 isoform X1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
- Conserved Domains (3) summary
-
- cd11304
Location:387 → 484
- Cadherin_repeat; Cadherin tandem repeat domain
- smart00112
Location:79 → 157
- CA; Cadherin repeats
- pfam01049
Location:637 → 783
- Cadherin_C; Cadherin cytoplasmic region
-
XM_006714435.5 → XP_006714498.1 cadherin-18 isoform X1
See identical proteins and their annotated locations for XP_006714498.1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
- Conserved Domains (3) summary
-
- cd11304
Location:387 → 484
- Cadherin_repeat; Cadherin tandem repeat domain
- smart00112
Location:79 → 157
- CA; Cadherin repeats
- pfam01049
Location:637 → 783
- Cadherin_C; Cadherin cytoplasmic region
-
XM_017008930.3 → XP_016864419.1 cadherin-18 isoform X1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
- Related
- ENSP00000274170.3, ENST00000274170.8
- Conserved Domains (3) summary
-
- cd11304
Location:387 → 484
- Cadherin_repeat; Cadherin tandem repeat domain
- smart00112
Location:79 → 157
- CA; Cadherin repeats
- pfam01049
Location:637 → 783
- Cadherin_C; Cadherin cytoplasmic region
-
XM_011513930.4 → XP_011512232.1 cadherin-18 isoform X2
See identical proteins and their annotated locations for XP_011512232.1
- UniProtKB/TrEMBL
- D6RER2, D6RIH8
- Related
- ENSP00000425854.1, ENST00000511273.1
- Conserved Domains (2) summary
-
- cd11304
Location:387 → 484
- Cadherin_repeat; Cadherin tandem repeat domain
- smart00112
Location:79 → 157
- CA; Cadherin repeats
Alternate T2T-CHM13v2.0
Genomic
-
NC_060929.1 Alternate T2T-CHM13v2.0
- Range
-
19473122..20577815 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054351387.1 → XP_054207362.1 cadherin-18 isoform X1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
-
XM_054351386.1 → XP_054207361.1 cadherin-18 isoform X1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
-
XM_054351389.1 → XP_054207364.1 cadherin-18 isoform X1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
-
XM_054351393.1 → XP_054207368.1 cadherin-18 isoform X1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
-
XM_054351392.1 → XP_054207367.1 cadherin-18 isoform X1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
-
XM_054351390.1 → XP_054207365.1 cadherin-18 isoform X1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
-
XM_054351388.1 → XP_054207363.1 cadherin-18 isoform X1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
-
XM_054351391.1 → XP_054207366.1 cadherin-18 isoform X1
- UniProtKB/Swiss-Prot
- A8K0I2, B4DHG6, Q13634, Q8N5Z2
-
XM_054351394.1 → XP_054207369.1 cadherin-18 isoform X3
-
XM_054351395.1 → XP_054207370.1 cadherin-18 isoform X4
-
XM_054351396.1 → XP_054207371.1 cadherin-18 isoform X2
- UniProtKB/TrEMBL
-
D6RER2