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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001171887.2 → NP_001165358.1 FGFR1 oncogene partner 2 isoform 2
See identical proteins and their annotated locations for NP_001165358.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks an in-frame exon in the coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
- Source sequence(s)
-
AC024896, BI829470, DA388639
- Consensus CDS
-
CCDS53767.1
- UniProtKB/Swiss-Prot
-
Q9NVK5
- Related
- ENSP00000323763.5, ENST00000327214.5
- Conserved Domains (1) summary
-
- pfam05769
Location:2 → 183
- SIKE; SIKE family
-
NM_001171888.2 → NP_001165359.1 FGFR1 oncogene partner 2 isoform 3
See identical proteins and their annotated locations for NP_001165359.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 3' UTR and 3' coding region, compared to variant 1. It encodes isoform 3, which has a shorter and distinct C-terminus, compared to isoform 1.
- Source sequence(s)
-
AC024896, AK001534, BC032143
- Consensus CDS
-
CCDS53766.1
- UniProtKB/Swiss-Prot
-
Q9NVK5
- Related
- ENSP00000437556.1, ENST00000546072.5
- Conserved Domains (1) summary
-
- pfam05769
Location:2 → 133
- DUF837; Protein of unknown function (DUF837)
-
NM_015633.3 → NP_056448.1 FGFR1 oncogene partner 2 isoform 1
See identical proteins and their annotated locations for NP_056448.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AC024896, AK001534
- Consensus CDS
-
CCDS8709.1
- UniProtKB/Swiss-Prot
- Q6R955, Q8N5L7, Q9NVK5, Q9P034, Q9UFK8
- Related
- ENSP00000229395.3, ENST00000229395.8
- Conserved Domains (1) summary
-
- pfam05769
Location:2 → 221
- SIKE; SIKE family
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000012.12 Reference GRCh38.p14 Primary Assembly
- Range
-
26938470..26966648
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060936.1 Alternate T2T-CHM13v2.0
- Range
-
26810479..26838658
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)