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    LINC02223 long intergenic non-protein coding RNA 2223 [ Homo sapiens (human) ]

    Gene ID: 646241, updated on 22-Oct-2024

    Summary

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    Official Symbol
    LINC02223provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2223provided by HGNC
    Primary source
    HGNC:HGNC:53092
    See related
    Ensembl:ENSG00000249937 AllianceGenome:HGNC:53092
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02223 in Genome Data Viewer
    Location:
    5p15.1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (17807274..17930489)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (17807816..17932300)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (17807383..17930598)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene H3 histone pseudogene 22 Neighboring gene uncharacterized LOC105374666 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:17882437-17883296 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:17883297-17884155 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:17951486-17952064 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:17952065-17952642 Neighboring gene ribosomal protein L36a pseudogene 21 Neighboring gene small nucleolar RNA SNORD81

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134286.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC113408, BC028204, BC031324
      Related
      ENST00000514771.7

    2. NR_134287.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks multiple 3' exons and contains an alternate 3' end, resulting in a shorter transcript than variant 1.
      Source sequence(s)
      AC113402, BC031324

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      17807274..17930489
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      17807816..17932300
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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