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    CCDC144CP coiled-coil domain containing 144C, pseudogene [ Homo sapiens (human) ]

    Gene ID: 348254, updated on 17-Sep-2024

    Summary

    Official Symbol
    CCDC144CPprovided by HGNC
    Official Full Name
    coiled-coil domain containing 144C, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:29073
    See related
    AllianceGenome:HGNC:29073
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CCDC144C
    Expression
    Broad expression in testis (RPKM 7.0), placenta (RPKM 2.0) and 15 other tissues See more
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    Genomic context

    See CCDC144CP in Genome Data Viewer
    Location:
    17p11.2
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (20321174..20402191)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (20269840..20350841)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (20224487..20305504)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene sperm antigen with calponin homology and coiled-coil domains 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:20039526-20039742 Neighboring gene RNA, U6 small nuclear 258, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20046676-20047184 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8306 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8307 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8308 Neighboring gene Sharpr-MPRA regulatory region 374 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20135138-20135638 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20184836-20185336 Neighboring gene RNA, U6 small nuclear 1057, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:20218551-20219051 Neighboring gene RNA, U6 small nuclear 467, pseudogene Neighboring gene UPF3A pseudogene 2 Neighboring gene ubiquitin specific peptidase 32 pseudogene 3 Neighboring gene signal recognition particle 68 pseudogene 3 Neighboring gene family with sequence similarity 106 member B

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_023380.1 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AC008088, AC015818, AL162090, AL162091, DA321951, DV080283, DV080284

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      20321174..20402191
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      20269840..20350841
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)