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    CG13096 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 34183, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CG13096provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0032050
    Locus tag
    Dmel_CG13096
    See related
    AllianceGenome:FB:FBgn0032050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG13096; UTP30
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in maturation of LSU-rRNA. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in adult head. Orthologous to human RSL1D1 (ribosomal L1 domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See CG13096 in Genome Data Viewer
    Location:
    29D3-29D3; 2-33 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (8509069..8511866, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (8509069..8511866, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Diuretic hormone 31 Neighboring gene beta-site APP-cleaving enzyme Neighboring gene uncharacterized protein Neighboring gene Phosphatidylinositol glycan anchor biosynthesis class U Neighboring gene mitochondrial ribosomal protein L51

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rasputin functions as a positive regulator of orb in Drosophila oogenesis. Costa A, et al. PLoS One, 2013. PMID 24069162, Free PMC Article
    2. Regulation of Ribosome Biogenesis and Protein Synthesis Controls Germline Stem Cell Differentiation. Sanchez CG, et al. Cell Stem Cell, 2016 Feb 4. PMID 26669894, Free PMC Article
    3. Genome-wide phenotypic RNAi screen in the Drosophila wing: global parameters. López-Varea A, et al. G3 (Bethesda), 2021 Dec 8. PMID 34599819, Free PMC Article
    4. Functional genomics identifies TOR-regulated genes that control growth and division. Guertin DA, et al. Curr Biol, 2006 May 23. PMID 16713952
    5. A Luciferase-fragment Complementation Assay to Detect Lipid Droplet-associated Protein-Protein Interactions. Kolkhof P, et al. Mol Cell Proteomics, 2017 Mar. PMID 27956707, Free PMC Article

    See all (33) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG13096-PA
    CG13096-PB

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      8509069..8511866 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001298828.1 → NP_001285757.1  uncharacterized protein Dmel_CG13096, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001285757.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8T9F1, Q9VLK2
      UniProtKB/TrEMBL
      H0RNN8
      Conserved Domains (1) summary
      pfam00687
      Location:285 → 499
      Ribosomal_L1; Ribosomal protein L1p/L10e family

    2. NM_135392.5 → NP_609236.2  uncharacterized protein Dmel_CG13096, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_609236.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8T9F1, Q9VLK2
      UniProtKB/TrEMBL
      H0RNN8
      Related
      FBpp0079306
      Conserved Domains (1) summary
      pfam00687
      Location:285 → 499
      Ribosomal_L1; Ribosomal protein L1p/L10e family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    H0RNN8 H0RNN8
    Q9VLK2.1 Q9VLK2

    Gene LinkOut

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