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    LINC03005 long intergenic non-protein coding RNA 3005 [ Homo sapiens (human) ]

    Gene ID: 105374972, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC03005provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 3005provided by HGNC
    Primary source
    HGNC:HGNC:56130
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC03005 in Genome Data Viewer
    Location:
    6p22.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (22643510..22717924, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (22516185..22590618, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (22643739..22718153, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:22313984-22314538 Neighboring gene uncharacterized LOC105374971 Neighboring gene prolactin Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:22441843-22443042 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:22443327-22443827 Neighboring gene MPRA-validated peak5731 silencer Neighboring gene HDGF like 1 Neighboring gene uncharacterized LOC105374973 Neighboring gene uncharacterized LOC102724736 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:22878206-22879013 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:22896808-22897410 Neighboring gene uncharacterized LOC105374974 Neighboring gene RNA, U6 small nuclear 1060, pseudogene Neighboring gene ribosomal protein L6 pseudogene 18

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134613.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AL033539, BM678001, BM725887, BX113657

    2. NR_134614.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an exon and contains two alternate 3' exons, resulting in a shorter transcript than variant 1.
      Source sequence(s)
      BX113657, W93315

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      22643510..22717924 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      22516185..22590618 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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