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    RBM47 RNA binding motif protein 47 [ Homo sapiens (human) ]

    Gene ID: 54502, updated on 28-Oct-2024

    Summary

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    Official Symbol
    RBM47provided by HGNC
    Official Full Name
    RNA binding motif protein 47provided by HGNC
    Primary source
    HGNC:HGNC:30358
    See related
    Ensembl:ENSG00000163694 MIM:619104; AllianceGenome:HGNC:30358
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    NET18
    Summary
    Enables enzyme binding activity; enzyme-substrate adaptor activity; and mRNA 3'-UTR binding activity. Involved in cytidine to uridine editing; positive regulation of type I interferon-mediated signaling pathway; and regulation of mRNA metabolic process. Located in cytoplasm and nucleus. Part of apolipoprotein B mRNA editing enzyme complex. [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Broad expression in colon (RPKM 20.7), kidney (RPKM 20.0) and 22 other tissues See more
    Orthologs
    mouse all
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    Genomic context

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    See RBM47 in Genome Data Viewer
    Location:
    4p14
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (40423280..40630852, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (40396950..40605120, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (40425297..40632611, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene cholinergic receptor nicotinic alpha 9 subunit Neighboring gene HNF1 motif-containing MPRA enhancer 253 Neighboring gene RNA, U7 small nuclear 74 pseudogene Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:40427439-40428638 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21490 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:40485009-40485545 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:40517897-40518207 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:40527595-40528394 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:40528395-40529195 Neighboring gene ribosomal protein L37 pseudogene 14 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15379 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:40563453-40563953 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:40564097-40564607 Neighboring gene microRNA 4802 Neighboring gene NANOG hESC enhancer GRCh37_chr4:40566953-40567529 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21491 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21492 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:40583996-40584174 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:40593988-40594488 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:40597457-40597958 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21493 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:40621147-40621674 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15380 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15381 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:40630738-40631614 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:40631615-40632492 Neighboring gene NANOG hESC enhancer GRCh37_chr4:40663700-40664205 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21495 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:40674299-40675498 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21496 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21497 Neighboring gene NANOG hESC enhancer GRCh37_chr4:40700528-40701301 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21499 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21498 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21500 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21501 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:40809683-40810183 Neighboring gene NOP2/Sun RNA methyltransferase family member 7 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:40837789-40838358 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21502 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21503 Neighboring gene NANOG hESC enhancer GRCh37_chr4:40842967-40843468 Neighboring gene ARF like GTPase 4A pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15382 Neighboring gene small nucleolar RNA U13 Neighboring gene amyloid beta precursor protein binding family B member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Pan-cancer EMT-signature identifies RBM47 down-regulation during colorectal cancer progression. Rokavec M, et al. Sci Rep, 2017 Jul 5. PMID 28680090, Free PMC Article
    2. RNA-Binding Motif Protein RBM47 Promotes Invasiveness of Glioblastoma Through Activation of Epithelial-to-Mesenchymal Transition Program. Xing YQ, et al. Genet Test Mol Biomarkers, 2023 Dec. PMID 38156907
    3. The RNA-binding protein RBM47 inhibits non-small cell lung carcinoma metastasis through modulation of AXIN1 mRNA stability and Wnt/β-catentin signaling. Shen DJ, et al. Surg Oncol, 2020 Sep. PMID 32891348
    4. Loss of the multifunctional RNA-binding protein RBM47 as a source of selectable metastatic traits in breast cancer. Vanharanta S, et al. Elife, 2014 Jun 4. PMID 24898756, Free PMC Article
    5. [RNA Binding Protein RBM47 Inhibits the K562 Cell Proliferation by Regulating HMGA2 mRNA Expression]. Lei T, et al. Zhongguo Shi Yan Xue Ye Xue Za Zhi, 2021 Jun. PMID 34105460

    See all (50) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Deubiquitinating enzyme OTUD4 stabilizes RBM47 to induce ATF3 transcription: a novel mechanism underlying the restrained malignant properties of ccRCC cells.
      Title: Deubiquitinating enzyme OTUD4 stabilizes RBM47 to induce ATF3 transcription: a novel mechanism underlying the restrained malignant properties of ccRCC cells.
    2. RNA-Binding Motif Protein RBM47 Promotes Invasiveness of Glioblastoma Through Activation of Epithelial-to-Mesenchymal Transition Program.
      Title: RNA-Binding Motif Protein RBM47 Promotes Invasiveness of Glioblastoma Through Activation of Epithelial-to-Mesenchymal Transition Program.
    3. RBM47 regulates intestinal injury and tumorigenesis by modifying proliferation, oxidative response, and inflammatory pathways.
      Title: RBM47 regulates intestinal injury and tumorigenesis by modifying proliferation, oxidative response, and inflammatory pathways.
    4. RNA binding motif 47 (RBM47): emerging roles in vertebrate development, RNA editing and cancer.
      Title: RNA binding motif 47 (RBM47): emerging roles in vertebrate development, RNA editing and cancer.
    5. The RNA-binding protein RBM47 inhibits non-small cell lung carcinoma metastasis through modulation of AXIN1 mRNA stability and Wnt/beta-catentin signaling.
      Title: The RNA-binding protein RBM47 inhibits non-small cell lung carcinoma metastasis through modulation of AXIN1 mRNA stability and Wnt/β-catentin signaling.
    6. [RNA Binding Protein RBM47 Inhibits the K562 Cell Proliferation by Regulating HMGA2 mRNA Expression].
      Title: [RNA Binding Protein RBM47 Inhibits the K562 Cell Proliferation by Regulating HMGA2 mRNA Expression].
    7. The RNA-binding protein RBM47 is a novel regulator of cell fate decisions by transcriptionally controlling the p53-p21-axis.
      Title: The RNA-binding protein RBM47 is a novel regulator of cell fate decisions by transcriptionally controlling the p53-p21-axis.
    8. The first RNA recognition motif (RRM) domain of RBM47 is critical in the regulation of alternative splicing and its recognition to pre-mRNA of TJP1. Furthermore, the TJP1-alpha- isoform enhances the assembly of actin stress fibers, thereby promoting cellular migration in a wound healing assay, providing a basis for studies related to the modulation of epithelial-to-mesenchymal transition via alternative splicing.
      Title: RBM47-regulated alternative splicing of TJP1 promotes actin stress fiber assembly during epithelial-to-mesenchymal transition.
    9. Results identified and confirmed to have downregulated gene expression of SFRP5 in sporadic nonfunctioning pancreatic neuroendocrine tumors (NFPanNETs) and CDCA7L and RBM47 in MEN1-related NFPanNETs.
      Title: Distinct genome-wide methylation patterns in sporadic and hereditary nonfunctioning pancreatic neuroendocrine tumors.
    10. miR-25 could directly target the RNA-binding motif protein 47 (RBM47). RBM47 is a promising target for the treatment of melanoma.
      Title: miR-25 Promotes Melanoma Progression by regulating RNA binding motif protein 47.
    Submit: New GeneRIF Correction See all GeneRIFs (14)

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide association studies and heritability estimates of body mass index related phenotypes in bangladeshi adults.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • FLJ20273, FLJ21344, FLJ21643, DKFZp686F02235

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables RNA binding HDA PubMed 
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables enzyme binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables enzyme-substrate adaptor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables mRNA 3'-UTR binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in 3'-UTR-mediated mRNA stabilization IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in cytidine to uridine editing IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in hematopoietic progenitor cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in positive regulation of interleukin-10 production IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in positive regulation of type I interferon-mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of alternative mRNA splicing, via spliceosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of apolipoprotein B mRNA editing enzyme complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IC
    Inferred by Curator
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein 47

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098634.2 → NP_001092104.1  RNA-binding protein 47 isoform a

      See identical proteins and their annotated locations for NP_001092104.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
      Source sequence(s)
      AC098869, AC112717
      Consensus CDS
      CCDS43223.1
      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3
      UniProtKB/TrEMBL
      B7ZLP7
      Related
      ENSP00000295971.7, ENST00000295971.12
      Conserved Domains (1) summary
      TIGR01648
      Location:21 → 593
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    2. NM_001371113.1 → NP_001358042.1  RNA-binding protein 47 isoform a

      Status: VALIDATED

      Source sequence(s)
      AC098869
      Consensus CDS
      CCDS43223.1
      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3
      UniProtKB/TrEMBL
      B7ZLP7
      Related
      ENSP00000371212.2, ENST00000381793.6
      Conserved Domains (1) summary
      TIGR01648
      Location:21 → 593
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    3. NM_001371114.1 → NP_001358043.1  RNA-binding protein 47 isoform c

      Status: VALIDATED

      Source sequence(s)
      AC098869, AC112717
      Consensus CDS
      CCDS93492.1
      UniProtKB/TrEMBL
      B7Z8Z7, B7ZLP7
      Related
      ENSP00000423243.1, ENST00000514014.1
      Conserved Domains (1) summary
      TIGR01648
      Location:1 → 555
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    4. NM_019027.4 → NP_061900.2  RNA-binding protein 47 isoform b

      See identical proteins and their annotated locations for NP_061900.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame exon in the mid-coding region, compared to variant 1, resulting in a shorter protein (isoform b), compared to isoform a.
      Source sequence(s)
      AC098869, AK000280, AK025296, BM837005, BP332501, CB124502
      Consensus CDS
      CCDS3460.1
      UniProtKB/TrEMBL
      B7ZLP7
      Related
      ENSP00000371214.6, ENST00000381795.10
      Conserved Domains (4) summary
      cd12485
      Location:70 → 147
      RRM1_RBM47; RNA recognition motif 1 found in vertebrate RNA-binding protein 47 (RBM47)
      cd12491
      Location:150 → 238
      RRM2_RBM47; RNA recognition motif 2 in vertebrate RNA-binding protein 47 (RBM47)
      cd12497
      Location:245 → 318
      RRM3_RBM47; RNA recognition motif 3 in vertebrate RNA-binding protein 47 (RBM47)
      TIGR01648
      Location:21 → 524
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      40423280..40630852 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017008310.3 → XP_016863799.1  RNA-binding protein 47 isoform X3

      UniProtKB/TrEMBL
      B7ZLP7
      Conserved Domains (4) summary
      cd12485
      Location:70 → 147
      RRM1_RBM47; RNA recognition motif 1 found in vertebrate RNA-binding protein 47 (RBM47)
      cd12491
      Location:150 → 238
      RRM2_RBM47; RNA recognition motif 2 in vertebrate RNA-binding protein 47 (RBM47)
      cd12497
      Location:245 → 318
      RRM3_RBM47; RNA recognition motif 3 in vertebrate RNA-binding protein 47 (RBM47)
      TIGR01648
      Location:21 → 524
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    2. XM_017008309.3 → XP_016863798.1  RNA-binding protein 47 isoform X2

      UniProtKB/TrEMBL
      B7ZLP7
      Conserved Domains (4) summary
      cd12485
      Location:70 → 147
      RRM1_RBM47; RNA recognition motif 1 found in vertebrate RNA-binding protein 47 (RBM47)
      cd12491
      Location:150 → 238
      RRM2_RBM47; RNA recognition motif 2 in vertebrate RNA-binding protein 47 (RBM47)
      cd12497
      Location:245 → 318
      RRM3_RBM47; RNA recognition motif 3 in vertebrate RNA-binding protein 47 (RBM47)
      TIGR01648
      Location:21 → 592
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    3. XM_005248103.5 → XP_005248160.1  RNA-binding protein 47 isoform X1

      See identical proteins and their annotated locations for XP_005248160.1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3
      UniProtKB/TrEMBL
      B7ZLP7
      Conserved Domains (1) summary
      TIGR01648
      Location:21 → 593
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    4. XM_047415818.1 → XP_047271774.1  RNA-binding protein 47 isoform X3

    5. XM_047415805.1 → XP_047271761.1  RNA-binding protein 47 isoform X2

    6. XM_047415797.1 → XP_047271753.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3

    7. XM_011513707.3 → XP_011512009.1  RNA-binding protein 47 isoform X1

      See identical proteins and their annotated locations for XP_011512009.1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3
      UniProtKB/TrEMBL
      B7ZLP7
      Conserved Domains (1) summary
      TIGR01648
      Location:21 → 593
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    8. XM_047415804.1 → XP_047271760.1  RNA-binding protein 47 isoform X2

    9. XM_047415796.1 → XP_047271752.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3

    10. XM_047415808.1 → XP_047271764.1  RNA-binding protein 47 isoform X2

    11. XM_047415798.1 → XP_047271754.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3

    12. XM_047415816.1 → XP_047271772.1  RNA-binding protein 47 isoform X2

    13. XM_047415822.1 → XP_047271778.1  RNA-binding protein 47 isoform X3

    14. XM_047415819.1 → XP_047271775.1  RNA-binding protein 47 isoform X3

    15. XM_047415807.1 → XP_047271763.1  RNA-binding protein 47 isoform X2

    16. XM_011513708.3 → XP_011512010.1  RNA-binding protein 47 isoform X1

      See identical proteins and their annotated locations for XP_011512010.1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3
      UniProtKB/TrEMBL
      B7ZLP7
      Conserved Domains (1) summary
      TIGR01648
      Location:21 → 593
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    17. XM_047415824.1 → XP_047271780.1  RNA-binding protein 47 isoform X3

    18. XM_047415814.1 → XP_047271770.1  RNA-binding protein 47 isoform X2

    19. XM_017008308.2 → XP_016863797.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3
      UniProtKB/TrEMBL
      B7ZLP7
      Conserved Domains (1) summary
      TIGR01648
      Location:21 → 593
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    20. XM_047415817.1 → XP_047271773.1  RNA-binding protein 47 isoform X3

    21. XM_047415803.1 → XP_047271759.1  RNA-binding protein 47 isoform X2

    22. XM_047415820.1 → XP_047271776.1  RNA-binding protein 47 isoform X3

    23. XM_047415810.1 → XP_047271766.1  RNA-binding protein 47 isoform X2

    24. XM_047415800.1 → XP_047271756.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3

    25. XM_047415811.1 → XP_047271767.1  RNA-binding protein 47 isoform X2

    26. XM_047415801.1 → XP_047271757.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3

    27. XM_047415802.1 → XP_047271758.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3

    28. XM_047415821.1 → XP_047271777.1  RNA-binding protein 47 isoform X3

    29. XM_047415809.1 → XP_047271765.1  RNA-binding protein 47 isoform X2

    30. XM_017008304.3 → XP_016863793.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3
      UniProtKB/TrEMBL
      B7ZLP7
      Conserved Domains (1) summary
      TIGR01648
      Location:21 → 593
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    31. XM_047415812.1 → XP_047271768.1  RNA-binding protein 47 isoform X2

    32. XM_005248108.5 → XP_005248165.1  RNA-binding protein 47 isoform X1

      See identical proteins and their annotated locations for XP_005248165.1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3
      UniProtKB/TrEMBL
      B7ZLP7
      Conserved Domains (1) summary
      TIGR01648
      Location:21 → 593
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    33. XM_047415823.1 → XP_047271779.1  RNA-binding protein 47 isoform X3

    34. XM_047415813.1 → XP_047271769.1  RNA-binding protein 47 isoform X2

    35. XM_047415815.1 → XP_047271771.1  RNA-binding protein 47 isoform X2

    36. XM_005248109.5 → XP_005248166.1  RNA-binding protein 47 isoform X1

      See identical proteins and their annotated locations for XP_005248166.1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3
      UniProtKB/TrEMBL
      B7ZLP7
      Conserved Domains (1) summary
      TIGR01648
      Location:21 → 593
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      40396950..40605120 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054350223.1 → XP_054206198.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3

    2. XM_054350226.1 → XP_054206201.1  RNA-binding protein 47 isoform X2

    3. XM_054350239.1 → XP_054206214.1  RNA-binding protein 47 isoform X3

    4. XM_054350215.1 → XP_054206190.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3

    5. XM_054350214.1 → XP_054206189.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3

    6. XM_054350212.1 → XP_054206187.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3

    7. XM_054350244.1 → XP_054206219.1  RNA-binding protein 47 isoform X3

    8. XM_054350232.1 → XP_054206207.1  RNA-binding protein 47 isoform X2

    9. XM_054350247.1 → XP_054206222.1  RNA-binding protein 47 isoform X3

    10. XM_054350224.1 → XP_054206199.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3

    11. XM_054350228.1 → XP_054206203.1  RNA-binding protein 47 isoform X2

    12. XM_054350237.1 → XP_054206212.1  RNA-binding protein 47 isoform X2

    13. XM_054350243.1 → XP_054206218.1  RNA-binding protein 47 isoform X3

    14. XM_054350240.1 → XP_054206215.1  RNA-binding protein 47 isoform X3

    15. XM_054350227.1 → XP_054206202.1  RNA-binding protein 47 isoform X2

    16. XM_054350213.1 → XP_054206188.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3

    17. XM_054350246.1 → XP_054206221.1  RNA-binding protein 47 isoform X3

    18. XM_054350235.1 → XP_054206210.1  RNA-binding protein 47 isoform X2

    19. XM_054350221.1 → XP_054206196.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3

    20. XM_054350238.1 → XP_054206213.1  RNA-binding protein 47 isoform X3

    21. XM_054350225.1 → XP_054206200.1  RNA-binding protein 47 isoform X2

    22. XM_054350241.1 → XP_054206216.1  RNA-binding protein 47 isoform X3

    23. XM_054350230.1 → XP_054206205.1  RNA-binding protein 47 isoform X2

    24. XM_054350217.1 → XP_054206192.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3

    25. XM_054350231.1 → XP_054206206.1  RNA-binding protein 47 isoform X2

    26. XM_054350218.1 → XP_054206193.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3

    27. XM_054350219.1 → XP_054206194.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3

    28. XM_054350242.1 → XP_054206217.1  RNA-binding protein 47 isoform X3

    29. XM_054350229.1 → XP_054206204.1  RNA-binding protein 47 isoform X2

    30. XM_054350216.1 → XP_054206191.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3

    31. XM_054350233.1 → XP_054206208.1  RNA-binding protein 47 isoform X2

    32. XM_054350220.1 → XP_054206195.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3

    33. XM_054350245.1 → XP_054206220.1  RNA-binding protein 47 isoform X3

    34. XM_054350234.1 → XP_054206209.1  RNA-binding protein 47 isoform X2

    35. XM_054350236.1 → XP_054206211.1  RNA-binding protein 47 isoform X2

    36. XM_054350222.1 → XP_054206197.1  RNA-binding protein 47 isoform X1

      UniProtKB/Swiss-Prot
      A0AV96, A0PJK2, B5MED4, Q8NI52, Q8NI53, Q9NXG3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0AV96.2 GenPept UniProtKB/Swiss-Prot:A0AV96

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