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    LINC02881 long intergenic non-protein coding RNA 2881 [ Homo sapiens (human) ]

    Gene ID: 100130539, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC02881provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2881provided by HGNC
    Primary source
    HGNC:HGNC:51236
    See related
    Ensembl:ENSG00000277288 AllianceGenome:HGNC:51236
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C10orf142
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    all
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    Genomic context

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    See LINC02881 in Genome Data Viewer
    Location:
    10q11.21
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (44292750..44294649)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (45173595..45175493)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (44788198..44790097)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2659 Neighboring gene long intergenic non-protein coding RNA 841 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44475579-44476080 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44476081-44476580 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44501255-44501828 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3305 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44510639-44511138 Neighboring gene NANOG hESC enhancer GRCh37_chr10:44537391-44537911 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12630 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12643 Neighboring gene uncharacterized LOC124902543 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:44607592-44608157 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12798 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12804 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:44664362-44665561 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12892 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44688953-44689454 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44689455-44689954 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_12920 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3307 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44703238-44703811 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44728896-44729550 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44729551-44730205 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr10:44730206-44730859 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_13072 Neighboring gene VISTA enhancer hs2509 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3311 Neighboring gene uncharacterized LOC124902544 Neighboring gene NANOG hESC enhancer GRCh37_chr10:44793368-44793869 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:44796158-44797357 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3312 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:44805333-44805502 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44806263-44806765 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3313 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2339 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:44821405-44821620 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:44833715-44834216 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44852471-44853402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44860047-44860546 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44859545-44860046 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:44866272-44866820 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44873825-44874771 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44878101-44878794 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44878795-44879488 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44879489-44880180 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2340 Neighboring gene uncharacterized LOC107984179 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44890534-44891279 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44891280-44892024 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:44894259-44895003 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44895004-44895748 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:44895749-44896492 Neighboring gene C-X-C motif chemokine ligand 12

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Genomewide association analysis of coronary artery disease. Samani NJ, et al. N Engl J Med, 2007 Aug 2. PMID 17634449, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Homology

    Other Names

    • uncharacterized protein C10orf142

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_164139.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137026
      Related
      ENST00000649743.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      44292750..44294649
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      45173595..45175493
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001258000.1: Suppressed sequence

      Description
      NM_001258000.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B7Z368.1 GenPept UniProtKB/Swiss-Prot:B7Z368

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.