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    RPS16P5 ribosomal protein S16 pseudogene 5 [ Homo sapiens (human) ]

    Gene ID: 647190, updated on 17-Sep-2024

    Summary

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    Official Symbol
    RPS16P5provided by HGNC
    Official Full Name
    ribosomal protein S16 pseudogene 5provided by HGNC
    Primary source
    HGNC:HGNC:36183
    See related
    AllianceGenome:HGNC:36183
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RPS16_3_702
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    Genomic context

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    See RPS16P5 in Genome Data Viewer
    Location:
    6p12.1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (53334460..53337617, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (53174193..53177350, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (53199258..53202415, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901332 Neighboring gene ELOVL fatty acid elongase 5 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_92203 Neighboring gene microRNA 5685 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24694 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:53169169-53169692 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24695 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24696 Neighboring gene Sharpr-MPRA regulatory region 4240 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24697 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17289 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:53224161-53224669 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:53224670-53225177 Neighboring gene ribosomal protein L31 pseudogene 28 Neighboring gene ribosomal protein L31 pseudogene 33

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046241.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL034374

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      53334460..53337617 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      53174193..53177350 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_010106.1: Suppressed sequence

      Description
      NG_010106.1: This RefSeq was permanently suppressed because there is evidence that this locus is transcribed.
    Nucleotide Protein
    Heading Accession and Version

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