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    LOC101928940 uncharacterized LOC101928940 [ Homo sapiens (human) ]

    Gene ID: 101928940, updated on 17-Sep-2024

    Summary

    Gene symbol
    LOC101928940
    Gene description
    uncharacterized LOC101928940
    See related
    Ensembl:ENSG00000256195
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LOC101928940 in Genome Data Viewer
    Location:
    11q23.2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (114360635..114380039, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (114371000..114390441, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (114231357..114250761, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 16 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:113962252-113962768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:113962769-113963283 Neighboring gene MPRA-validated peak1475 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:114030299-114030800 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:114030801-114031300 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:114034953-114035454 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:114035455-114035954 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3915 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:114083238-114083738 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:114083739-114084239 Neighboring gene Sharpr-MPRA regulatory region 4637 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:114111177-114111676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:114128337-114128865 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:114166597-114167097 Neighboring gene nicotinamide N-methyltransferase Neighboring gene uncharacterized LOC107984391 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancers GRCh37_chr11:114270475-114271017 and GRCh37_chr11:114271018-114271560 Neighboring gene chromosome 11 open reading frame 71 Neighboring gene RNA binding motif protein 7

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Meta-analysis of genome-wide association studies of asthma in ethnically diverse North American populations.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120567.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP002373, AP002518
      Related
      ENST00000534904.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      114360635..114380039 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      114371000..114390441 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)