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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_052873.1 RefSeqGene
- Range
-
5477..63910
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001300907.1 → NP_001287836.1 histone-lysine N-methyltransferase KMT5B isoform 3
See identical proteins and their annotated locations for NP_001287836.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) contains an alternate exon and uses a downstream start codon compared to variant 1. The resulting isoform (3) is shorter at the N-terminus compared to isoform 1.
- Source sequence(s)
-
AP002992, BC108304
- Consensus CDS
-
CCDS91518.1
- UniProtKB/TrEMBL
-
A0A8V8TQB9
- Conserved Domains (1) summary
-
- smart00317
Location:31 → 142
- SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
-
NM_001300908.2 → NP_001287837.1 histone-lysine N-methyltransferase KMT5B isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses an alternate first exon and an alternate splice junction at the 5' end of an exon, and uses a downstream start codon compared to variant 1. The resulting isoform (4) is shorter at the N-terminus compared to isoform 1.
- Source sequence(s)
-
AK314336, AP002992, CR997801
- Conserved Domains (1) summary
-
- pfam00856
Location:21 → 68
- SET; SET domain
-
NM_001300909.2 → NP_001287838.1 histone-lysine N-methyltransferase KMT5B isoform 5
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) uses an alternate first exon, lacks an alternate in-frame exon, and differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (5) has a shorter and distinct C-terminus and lacks an alternate internal segment compared to isoform 1.
- Source sequence(s)
-
AK299201, AP002992, BC002522, CR997801, KC877427
- Consensus CDS
-
CCDS76444.1
- UniProtKB/TrEMBL
- B7WNX0, B7Z5N2
- Related
- ENSP00000384724.2, ENST00000402185.6
- Conserved Domains (1) summary
-
- smart00317
Location:180 → 291
- SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
-
NM_001363566.2 → NP_001350495.1 histone-lysine N-methyltransferase KMT5B isoform 6
Status: REVIEWED
- Source sequence(s)
-
AP002992, KC877427
- Consensus CDS
-
CCDS86221.1
- UniProtKB/TrEMBL
- B5MCB3, B7Z5N2
- Related
- ENSP00000385005.1, ENST00000402789.5
- Conserved Domains (1) summary
-
- cd19184
Location:192 → 335
- SET_KMT5B; SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 5B (KMT5B) and similar proteins
-
NM_001369424.1 → NP_001356353.1 histone-lysine N-methyltransferase KMT5B isoform 7
Status: REVIEWED
- Source sequence(s)
-
AP002992, KC877427
- Related
-
ENST00000700525.1
- Conserved Domains (1) summary
-
- smart00317
Location:31 → 142
- SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
-
NM_001369425.1 → NP_001356354.1 histone-lysine N-methyltransferase KMT5B isoform 8
Status: REVIEWED
- Source sequence(s)
-
AP002992
- Consensus CDS
-
CCDS91519.1
- UniProtKB/TrEMBL
- B7Z5N2, C9JFG1
- Related
- ENSP00000403233.2, ENST00000458496.2
- Conserved Domains (1) summary
-
- smart00317
Location:132 → 243
- SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
-
NM_001369426.1 → NP_001356355.1 histone-lysine N-methyltransferase KMT5B isoform 1
Status: REVIEWED
- Source sequence(s)
-
AP002992, KC877427
- Consensus CDS
-
CCDS31623.1
- UniProtKB/Swiss-Prot
- A0A0A0MT19, B7WNX7, Q3SX56, Q4FZB7, Q4V775, Q6P150, Q96E44, Q9BUL0, Q9H022, Q9H2K3, Q9NXV3, Q9Y393
- Conserved Domains (1) summary
-
- cd19184
Location:192 → 335
- SET_KMT5B; SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 5B (KMT5B) and similar proteins
-
NM_001369427.1 → NP_001356356.1 histone-lysine N-methyltransferase KMT5B isoform 2
Status: REVIEWED
- Source sequence(s)
-
AP002992, KC877427
- Consensus CDS
-
CCDS44660.1
- UniProtKB/TrEMBL
-
B7Z5N2
- Related
- ENSP00000385640.1, ENST00000405515.5
- Conserved Domains (1) summary
-
- smart00317
Location:203 → 314
- SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
-
NM_001369428.1 → NP_001356357.1 histone-lysine N-methyltransferase KMT5B isoform 3
Status: REVIEWED
- Source sequence(s)
-
AP002992, KC877427
- Consensus CDS
-
CCDS91518.1
- UniProtKB/TrEMBL
-
A0A8V8TQB9
- Conserved Domains (1) summary
-
- smart00317
Location:31 → 142
- SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
-
NM_001369429.1 → NP_001356358.1 histone-lysine N-methyltransferase KMT5B isoform 3
Status: REVIEWED
- Source sequence(s)
-
AP002992, KC877427
- Consensus CDS
-
CCDS91518.1
- UniProtKB/TrEMBL
-
A0A8V8TQB9
- Related
- ENSP00000515030.1, ENST00000700523.1
- Conserved Domains (1) summary
-
- smart00317
Location:31 → 142
- SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
-
NM_001369430.1 → NP_001356359.1 histone-lysine N-methyltransferase KMT5B isoform 3
Status: REVIEWED
- Source sequence(s)
-
AP002992
- Consensus CDS
-
CCDS91518.1
- UniProtKB/TrEMBL
-
A0A8V8TQB9
- Conserved Domains (1) summary
-
- smart00317
Location:31 → 142
- SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
-
NM_001369431.1 → NP_001356360.1 histone-lysine N-methyltransferase KMT5B isoform 3
Status: REVIEWED
- Source sequence(s)
-
AP002992, KC877427
- Consensus CDS
-
CCDS91518.1
- UniProtKB/TrEMBL
-
A0A8V8TQB9
- Conserved Domains (1) summary
-
- smart00317
Location:31 → 142
- SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
-
NM_001369432.1 → NP_001356361.1 histone-lysine N-methyltransferase KMT5B isoform 3
Status: REVIEWED
- Source sequence(s)
-
AP002992, KC877427
- Consensus CDS
-
CCDS91518.1
- UniProtKB/TrEMBL
-
A0A8V8TQB9
- Conserved Domains (1) summary
-
- smart00317
Location:31 → 142
- SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
-
NM_001369433.1 → NP_001356362.1 histone-lysine N-methyltransferase KMT5B isoform 3
Status: REVIEWED
- Source sequence(s)
-
AP002992, KC877427
- Consensus CDS
-
CCDS91518.1
- UniProtKB/TrEMBL
-
A0A8V8TQB9
- Conserved Domains (1) summary
-
- smart00317
Location:31 → 142
- SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
-
NM_016028.4 → NP_057112.3 histone-lysine N-methyltransferase KMT5B isoform 2
See identical proteins and their annotated locations for NP_057112.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) has an alternate 3' exon and utilizes an upstream stop codon, compared to variant 1. The resulting isoform (2) is shorter and has a distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
BC002522, BM152996
- Consensus CDS
-
CCDS44660.1
- UniProtKB/TrEMBL
-
B7Z5N2
- Related
- ENSP00000385965.2, ENST00000401547.6
- Conserved Domains (1) summary
-
- smart00317
Location:203 → 314
- SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
-
NM_017635.5 → NP_060105.3 histone-lysine N-methyltransferase KMT5B isoform 1
See identical proteins and their annotated locations for NP_060105.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AP002992, BC099714, BC108304
- Consensus CDS
-
CCDS31623.1
- UniProtKB/Swiss-Prot
- A0A0A0MT19, B7WNX7, Q3SX56, Q4FZB7, Q4V775, Q6P150, Q96E44, Q9BUL0, Q9H022, Q9H2K3, Q9NXV3, Q9Y393
- Related
- ENSP00000305899.4, ENST00000304363.9
- Conserved Domains (1) summary
-
- cd19184
Location:192 → 335
- SET_KMT5B; SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 5B (KMT5B) and similar proteins
RNA
-
NR_161378.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AP002992, KC877427
-
NR_161379.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AP002992, KC877427
-
NR_161380.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AP002992, KC877427
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000011.10 Reference GRCh38.p14 Primary Assembly
- Range
-
68154863..68213648 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047427072.1 → XP_047283028.1 histone-lysine N-methyltransferase KMT5B isoform X4
-
XM_011545092.4 → XP_011543394.1 histone-lysine N-methyltransferase KMT5B isoform X3
- UniProtKB/TrEMBL
-
C9J6S5
- Related
- ENSP00000406377.2, ENST00000453170.6
- Conserved Domains (1) summary
-
- smart00317
Location:132 → 243
- SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
-
XM_005274036.5 → XP_005274093.2 histone-lysine N-methyltransferase KMT5B isoform X2
See identical proteins and their annotated locations for XP_005274093.2
- Conserved Domains (1) summary
-
- smart00317
Location:180 → 291
- SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
-
XM_005274035.5 → XP_005274092.2 histone-lysine N-methyltransferase KMT5B isoform X1
See identical proteins and their annotated locations for XP_005274092.2
- UniProtKB/Swiss-Prot
- A0A0A0MT19, B7WNX7, Q3SX56, Q4FZB7, Q4V775, Q6P150, Q96E44, Q9BUL0, Q9H022, Q9H2K3, Q9NXV3, Q9Y393
- Conserved Domains (1) summary
-
- cd19184
Location:192 → 335
- SET_KMT5B; SET domain (including post-SET domain) found in histone-lysine N-methyltransferase 5B (KMT5B) and similar proteins
-
XM_006718581.2 → XP_006718644.1 histone-lysine N-methyltransferase KMT5B isoform X2
See identical proteins and their annotated locations for XP_006718644.1
- Conserved Domains (1) summary
-
- smart00317
Location:180 → 291
- SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
-
XM_047427071.1 → XP_047283027.1 histone-lysine N-methyltransferase KMT5B isoform X1
- UniProtKB/Swiss-Prot
- A0A0A0MT19, B7WNX7, Q3SX56, Q4FZB7, Q4V775, Q6P150, Q96E44, Q9BUL0, Q9H022, Q9H2K3, Q9NXV3, Q9Y393
-
XM_047427073.1 → XP_047283029.1 histone-lysine N-methyltransferase KMT5B isoform X5
-
XM_024448570.2 → XP_024304338.1 histone-lysine N-methyltransferase KMT5B isoform X5
Alternate T2T-CHM13v2.0
Genomic
-
NC_060935.1 Alternate T2T-CHM13v2.0
- Range
-
68158479..68217261 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054369052.1 → XP_054225027.1 histone-lysine N-methyltransferase KMT5B isoform X4
-
XM_054369051.1 → XP_054225026.1 histone-lysine N-methyltransferase KMT5B isoform X3
- UniProtKB/TrEMBL
-
C9J6S5
-
XM_054369049.1 → XP_054225024.1 histone-lysine N-methyltransferase KMT5B isoform X2
-
XM_054369047.1 → XP_054225022.1 histone-lysine N-methyltransferase KMT5B isoform X1
- UniProtKB/Swiss-Prot
- A0A0A0MT19, B7WNX7, Q3SX56, Q4FZB7, Q4V775, Q6P150, Q96E44, Q9BUL0, Q9H022, Q9H2K3, Q9NXV3, Q9Y393
-
XM_054369050.1 → XP_054225025.1 histone-lysine N-methyltransferase KMT5B isoform X2
-
XM_054369048.1 → XP_054225023.1 histone-lysine N-methyltransferase KMT5B isoform X1
- UniProtKB/Swiss-Prot
- A0A0A0MT19, B7WNX7, Q3SX56, Q4FZB7, Q4V775, Q6P150, Q96E44, Q9BUL0, Q9H022, Q9H2K3, Q9NXV3, Q9Y393
-
XM_054369053.1 → XP_054225028.1 histone-lysine N-methyltransferase KMT5B isoform X5
-
XM_054369054.1 → XP_054225029.1 histone-lysine N-methyltransferase KMT5B isoform X5