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    Parm1 prostate androgen-regulated mucin-like protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 231440, updated on 2-Nov-2024

    Summary

    Official Symbol
    Parm1provided by MGI
    Official Full Name
    prostate androgen-regulated mucin-like protein 1provided by MGI
    Primary source
    MGI:MGI:2443349
    See related
    Ensembl:ENSMUSG00000034981 AllianceGenome:MGI:2443349
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2210012L08Rik; 9130213B05Rik
    Summary
    Predicted to be located in cytosol and nucleoplasm. Predicted to be active in Golgi apparatus; endosome; and plasma membrane. Is expressed in several structures, including alimentary system; central nervous system; embryo mesenchyme; genitourinary system; and nose. Orthologous to human PARM1 (prostate androgen-regulated mucin-like protein 1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in adrenal adult (RPKM 96.9), colon adult (RPKM 66.3) and 13 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Parm1 in Genome Data Viewer
    Location:
    5 E2; 5 44.78 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (91665559..91771870)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (91517700..91624011)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene betacellulin, epidermal growth factor family member Neighboring gene predicted gene, 42110 Neighboring gene predicted gene, 57739 Neighboring gene STARR-seq mESC enhancer starr_13614 Neighboring gene STARR-seq mESC enhancer starr_13615 Neighboring gene STARR-seq mESC enhancer starr_13616 Neighboring gene STARR-seq mESC enhancer starr_13617 Neighboring gene STARR-seq mESC enhancer starr_13618 Neighboring gene predicted gene, 36222 Neighboring gene tRNA methyltransferase 11-2, pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (1)  1 citation

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in Golgi apparatus ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in early endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in early endosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in early endosome ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in endosome membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in late endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in late endosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in late endosome ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    prostate androgen-regulated mucin-like protein 1 homolog
    Names
    PARM-1
    prostatic androgen-repressed message-1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145562.2NP_663537.1  prostate androgen-regulated mucin-like protein 1 homolog precursor

      See identical proteins and their annotated locations for NP_663537.1

      Status: PROVISIONAL

      Source sequence(s)
      AC115723, AC122216
      Consensus CDS
      CCDS39146.1
      UniProtKB/Swiss-Prot
      A5JSU4, Q3TTV0, Q3UFU4, Q923D3
      Related
      ENSMUSP00000042844.10, ENSMUST00000040576.10
      Conserved Domains (2) summary
      pfam15310
      Location:124219
      VAD1-2; Vitamin A-deficiency (VAD) rat model signalling
      pfam17061
      Location:15296
      PARM; PARM

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      91665559..91771870
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)