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    LINC03122 long intergenic non-protein coding RNA 3122 [ Homo sapiens (human) ]

    Gene ID: 285668, updated on 2-Nov-2024

    Summary

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    Official Symbol
    LINC03122provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 3122provided by HGNC
    Primary source
    HGNC:HGNC:26744
    See related
    Ensembl:ENSG00000178722 AllianceGenome:HGNC:26744
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C5orf64; LINC03119
    Summary
    Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    all
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    Genomic context

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    See LINC03122 in Genome Data Viewer
    Location:
    5q12.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (61637760..61730997)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (62456884..62550108)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (60933587..61026824)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene zinc finger SWIM-type containing 6 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:60703838-60705037 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:60711419-60712045 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:60712046-60712673 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:60712674-60713300 Neighboring gene ribosomal protein L3 pseudogene 6 Neighboring gene basic proline-rich protein Neighboring gene uncharacterized LOC101928651 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:60968788-60969288 Neighboring gene RNA, U6 small nuclear 913, pseudogene Neighboring gene heat shock protein family D (Hsp60) member 1 pseudogene 22 Neighboring gene uncharacterized LOC124900983 Neighboring gene long intergenic non-protein coding RNA 3123

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Long non-coding RNA C5orf64 is a potential indicator for tumor microenvironment and mutation pattern remodeling in lung adenocarcinoma. Pang Z, et al. Genomics, 2021 Jan. PMID 33309768
    2. Genome-wide association study of Alzheimer's disease. Kamboh MI, et al. Transl Psychiatry, 2012 May 15. PMID 22832961, Free PMC Article
    3. Dependence of Human Colorectal Cells Lacking the FBW7 Tumor Suppressor on the Spindle Assembly Checkpoint. Bailey ML, et al. Genetics, 2015 Nov. PMID 26354767, Free PMC Article
    4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    5. The BioPlex Network: A Systematic Exploration of the Human Interactome. Huttlin EL, et al. Cell, 2015 Jul 16. PMID 26186194, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide association study of Alzheimer's disease.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Other Names

    • uncharacterized protein C5orf64

    Clone Names

    • FLJ37543, FLJ45901, MGC138187, MGC138213

    Gene Ontology Provided by GOA

    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126523.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate internal exon, compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
      Source sequence(s)
      AC094086, AK094862, DA152848, DB166929

    2. NR_126524.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an alternate internal exon and contains alternate 3' exon structure, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      DA364196, DA388090, DB309601, DB463100
      Related
      ENST00000701704.1

    3. NR_126525.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) shares the 5' terminal exon but lacks the remaining exons, and instead contains an alternate 3' terminal exon, compared to variant 1. This variant is represented as non-coding because it lacks the entire ORF found in variant 1.
      Source sequence(s)
      DA364196, DA388090, DB309601

    4. NR_161251.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC026746, AC094086
      Related
      ENST00000505642.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      61637760..61730997
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      62456884..62550108
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2M2E5.2 GenPept UniProtKB/Swiss-Prot:Q2M2E5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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