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    ID2B inhibitor of DNA binding 2B (pseudogene) [ Homo sapiens (human) ]

    Gene ID: 84099, updated on 17-Jun-2024

    Summary

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    Official Symbol
    ID2Bprovided by HGNC
    Official Full Name
    inhibitor of DNA binding 2B (pseudogene)provided by HGNC
    Primary source
    HGNC:HGNC:30656
    See related
    AllianceGenome:HGNC:30656
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and nucleus. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See ID2B in Genome Data Viewer
    Location:
    3p14.2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (62123426..62124718, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (62166918..62168192, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (62109100..62110392, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type G Neighboring gene ribosomal protein L10a pseudogene 6 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:61815091-61815694 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:61815695-61816299 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:61852378-61852880 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:61852881-61853381 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:61857459-61858243 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr3:61860549-61861255 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:61932324-61933045 Neighboring gene Sharpr-MPRA regulatory region 14465 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr3:62026884-62028083 Neighboring gene RNA, U2 small nuclear 10, pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr3:62155504-62156044 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_70816 Neighboring gene Sharpr-MPRA regulatory region 11400 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:62175493-62176339 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:62176867-62177367 Neighboring gene uncharacterized LOC124909389 Neighboring gene PTPRG antisense RNA 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two distinct cDNA sequences encoding the human helix-loop-helix protein Id2. Kurabayashi M, et al. Gene, 1993 Nov 15. PMID 8224921
    2. Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. Luykx JJ, et al. Mol Psychiatry, 2014 Feb. PMID 23319000

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.
    EBI GWAS Catalog

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • inhibitor of DNA binding 2B, HLH protein (pseudogene)
    • inhibitor of DNA binding 2B, dominant negative helix-loop-helix protein (pseudogene)
    • inhibitor of differentiation 2B
    • striated muscle contraction regulatory protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_000937.3 

      Range
      101..1393
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      62123426..62124718 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      62166918..62168192 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001039082.1: Suppressed sequence

      Description
      NM_001039082.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.

    2. NR_026582.1: Suppressed sequence

      Description
      NR_026582.1: This RefSeq was permanently suppressed because there is insufficient evidence that this locus is transcribed.
    Nucleotide Protein
    Heading Accession and Version

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