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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_008853.1 RefSeqGene
- Range
-
5001..83874
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_000210.4 → NP_000201.2 integrin alpha-6 isoform b preproprotein
See identical proteins and their annotated locations for NP_000201.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) contains an alternate coding exon compared to variant 1, which results in a frameshift. The resulting isoform (b) is shorter and has a distinct C-terminus compared to isoform a.
- Source sequence(s)
-
AB208842, AC078883, BG180469, DB457895, X53586, X59512
- Consensus CDS
-
CCDS2249.1
- UniProtKB/Swiss-Prot
-
P23229
- Related
- ENSP00000508249.1, ENST00000684293.1
- Conserved Domains (3) summary
-
- smart00191
Location:374 → 425
- Int_alpha; Integrin alpha (beta-propellor repeats)
- pfam00357
Location:1038 → 1052
- Integrin_alpha; Integrin alpha cytoplasmic region
- pfam08441
Location:464 → 939
- Integrin_alpha2; Integrin alpha
-
NM_001079818.3 → NP_001073286.1 integrin alpha-6 isoform a preproprotein
See identical proteins and their annotated locations for NP_001073286.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the shorter transcript and encodes the longer isoform (a).
- Source sequence(s)
-
AB208842, AC078883, BG180469, DB457895, X53586, X59512
- Consensus CDS
-
CCDS46451.1
- UniProtKB/Swiss-Prot
-
P23229
- Related
- ENSP00000386896.1, ENST00000409080.6
- Conserved Domains (2) summary
-
- smart00191
Location:374 → 425
- Int_alpha; Integrin alpha (beta-propellor repeats)
- pfam08441
Location:464 → 939
- Integrin_alpha2; Integrin alpha
-
NM_001316306.2 → NP_001303235.1 integrin alpha-6 isoform c
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) has multiple differences compared to variant 1. The encoded isoform (c) is shorter and has a distinct C-terminus compared to isoform a, and lacks the predicted signal peptide present in isoforms a and b. It is not known whether this isoform (c) is proteolytically processed in the same manner as isoforms a and b.
- Source sequence(s)
-
AB208842, AC078883, AK294436, AK296496, AK311695, BG180469
- Consensus CDS
-
CCDS82534.1
- UniProtKB/Swiss-Prot
-
P23229
- Related
- ENSP00000386614.1, ENST00000409532.5
- Conserved Domains (3) summary
-
- smart00191
Location:255 → 306
- Int_alpha; Integrin alpha (beta-propellor repeats)
- pfam00357
Location:919 → 933
- Integrin_alpha; Integrin alpha cytoplasmic region
- pfam08441
Location:345 → 820
- Integrin_alpha2; Integrin alpha
-
NM_001365529.2 → NP_001352458.1 integrin alpha-6 isoform d precursor
Status: REVIEWED
- Source sequence(s)
-
AC078883
- Conserved Domains (2) summary
-
- smart00191
Location:374 → 425
- Int_alpha; Integrin alpha (beta-propellor repeats)
- pfam08441
Location:464 → 924
- Integrin_alpha2; Integrin alpha
-
NM_001365530.2 → NP_001352459.1 integrin alpha-6 isoform e precursor
Status: REVIEWED
- Source sequence(s)
-
AC078883
- Consensus CDS
-
CCDS92898.1
- UniProtKB/TrEMBL
-
A0A8C8KBL6
- Related
- ENSP00000264107.8, ENST00000264107.12
- Conserved Domains (3) summary
-
- smart00191
Location:374 → 425
- Int_alpha; Integrin alpha (beta-propellor repeats)
- pfam00357
Location:1023 → 1037
- Integrin_alpha; Integrin alpha cytoplasmic region
- pfam08441
Location:464 → 924
- Integrin_alpha2; Integrin alpha
-
NM_001394928.1 → NP_001381857.1 integrin alpha-6 isoform 6 precursor
Status: REVIEWED
- Source sequence(s)
-
AC078883
- Consensus CDS
-
CCDS92897.1
- UniProtKB/Swiss-Prot
- B2RMU9, B4DG69, B4DKB8, C4AM96, G5E9H1, P23229, Q08443, Q0MRC7, Q14646, Q16508, Q53RX7, Q59HB7, Q86VL6, Q9UCT1, Q9UN03
- Related
- ENSP00000406694.1, ENST00000442250.6
- Conserved Domains (2) summary
-
- smart00191
Location:413 → 464
- Int_alpha; Integrin alpha (beta-propellor repeats)
- pfam08441
Location:503 → 978
- Integrin_alpha2; Integrin alpha