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    LINC02036 long intergenic non-protein coding RNA 2036 [ Homo sapiens (human) ]

    Gene ID: 100505920, updated on 22-Oct-2024

    Summary

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    Official Symbol
    LINC02036provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2036provided by HGNC
    Primary source
    HGNC:HGNC:52876
    See related
    Ensembl:ENSG00000214145 AllianceGenome:HGNC:52876
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in thyroid (RPKM 5.6), testis (RPKM 0.8) and 1 other tissue See more
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    Genomic context

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    See LINC02036 in Genome Data Viewer
    Location:
    3q29
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (194203016..194250153, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (196899742..196946912, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (193920805..193967942, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene RNA, 7SL, cytoplasmic 215, pseudogene Neighboring gene uncharacterized LOC107986172 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193878773-193879704 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193893180-193894093 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21017 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15018 Neighboring gene Sharpr-MPRA regulatory region 6697 Neighboring gene VISTA enhancer hs1543 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:193932031-193932834 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193949267-193949768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193949769-193950268 Neighboring gene long intergenic non-protein coding RNA 2037 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15019 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:193988835-193989766 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr3:193994438-193995637 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194000115-194000616 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:194000617-194001116 Neighboring gene long intergenic non-protein coding RNA 2048 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21018 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21019 Neighboring gene long intergenic non-protein coding RNA 887 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21020

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. Adams MD, et al. Nature, 1995 Sep 28. PMID 7566098
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125403.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript.
      Source sequence(s)
      AC117469
      Related
      ENST00000794668.1

    2. NR_125404.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' terminal exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AC117469

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      194203016..194250153 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      196899742..196946912 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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