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    ARRDC3-AS1 ARRDC3 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100129716, updated on 17-Jun-2024

    Summary

    Official Symbol
    ARRDC3-AS1provided by HGNC
    Official Full Name
    ARRDC3 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:44145
    See related
    Ensembl:ENSG00000281357 AllianceGenome:HGNC:44145
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in testis (RPKM 1.5), bone marrow (RPKM 0.6) and 23 other tissues See more
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    Genomic context

    See ARRDC3-AS1 in Genome Data Viewer
    Location:
    5q14.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (91380347..91420715)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (91864199..91904554)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (90676164..90716532)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:90607093-90608292 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr5:90609644-90610843 Neighboring gene lung cancer associated transcript 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:90627976-90628476 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:90634700-90635294 Neighboring gene ribosomal protein S18 pseudogene 7 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16171 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16172 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:90679204-90679721 Neighboring gene arrestin domain containing 3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:90783158-90783705 Neighboring gene RAB5C, member RAS oncogene family pseudogene 2 Neighboring gene uncharacterized LOC107986434

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Markers

    Other Names

    • ARRDC3 antisense RNA 1 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027435.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC008799
      Related
      ENST00000625713.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      91380347..91420715
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      91864199..91904554
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)