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    LINC02554 long intergenic non-protein coding RNA 2554 [ Homo sapiens (human) ]

    Gene ID: 100507657, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC02554provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2554provided by HGNC
    Primary source
    HGNC:HGNC:53594
    See related
    Ensembl:ENSG00000226741 AllianceGenome:HGNC:53594
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC02554 in Genome Data Viewer
    Location:
    22q12.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (27310651..27317840)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (27771576..27778764)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (27706612..27713801)

    Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372977 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr22:27622369-27623568 Neighboring gene long intergenic non-protein coding RNA 1638 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:27654930-27655430 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:27655431-27655931 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:27692319-27692881 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:27706583-27707357 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:27707358-27708131 Neighboring gene ReSE screen-validated silencer GRCh37_chr22:27710082-27710283 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63191 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63195 Neighboring gene uncharacterized LOC105372979 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_63206 Neighboring gene Sharpr-MPRA regulatory region 9271 Neighboring gene uncharacterized LOC102724900

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134581.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL020994, BX102824, CR627208
      Related
      ENST00000426467.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

      Range
      27310651..27317840
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060946.1 Alternate T2T-CHM13v2.0

      Range
      27771576..27778764
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)